Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ERCC4Q92889 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 CARS-214ENST00000529772 2637 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC16.29■□□□□ 0.2
ERCC4Q92889 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 ARHGEF17-201ENST00000263674 7853 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
ERCC4Q92889 CD8B2-202ENST00000417670 633 ntBASIC16.28■□□□□ 0.2
ERCC4Q92889 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 RN7SL752P-201ENST00000463779 287 ntBASIC16.28■□□□□ 0.2
ERCC4Q92889 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC16.28■□□□□ 0.2
ERCC4Q92889 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 AC132938.2-201ENST00000579188 680 ntBASIC16.28■□□□□ 0.2
ERCC4Q92889 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 AL591163.1-201ENST00000641757 987 ntBASIC16.28■□□□□ 0.2
ERCC4Q92889 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 FAM171B-201ENST00000304698 5826 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 TMBIM7P-202ENST00000641474 1516 ntBASIC16.28■□□□□ 0.2
ERCC4Q92889 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 CD276-202ENST00000318443 3469 ntAPPRIS P2 TSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC16.28■□□□□ 0.2
ERCC4Q92889 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
ERCC4Q92889 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
ERCC4Q92889 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
ERCC4Q92889 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 AC005229.1-201ENST00000392885 409 ntBASIC16.27■□□□□ 0.2
ERCC4Q92889 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 HNRNPA1P27-201ENST00000412087 955 ntBASIC16.27■□□□□ 0.2
ERCC4Q92889 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.27■□□□□ 0.2
ERCC4Q92889 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 COX5BP1-201ENST00000507622 393 ntBASIC16.27■□□□□ 0.2
ERCC4Q92889 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.27■□□□□ 0.2
ERCC4Q92889 IGHVIII-5-2-201ENST00000522505 261 ntBASIC16.27■□□□□ 0.2
ERCC4Q92889 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.27■□□□□ 0.2
ERCC4Q92889 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.27■□□□□ 0.2
ERCC4Q92889 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
ERCC4Q92889 BAP1-211ENST00000615113 489 ntBASIC16.27■□□□□ 0.2
ERCC4Q92889 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
ERCC4Q92889 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC16.27■□□□□ 0.19
ERCC4Q92889 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC16.27■□□□□ 0.19
ERCC4Q92889 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ERCC4Q92889 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
ERCC4Q92889 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.27■□□□□ 0.19
ERCC4Q92889 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC16.27■□□□□ 0.19
ERCC4Q92889 AC009093.10-201ENST00000641956 1442 ntBASIC16.27■□□□□ 0.19
ERCC4Q92889 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
ERCC4Q92889 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
ERCC4Q92889 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 TAF12-201ENST00000263974 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 MPRIP-202ENST00000341712 3846 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms