Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.85□□□□□ -0.19
FOXA1P55317 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA1P55317 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 CALY-203ENST00000368558 825 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 MXI1-205ENST00000393134 889 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA1P55317 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.85□□□□□ -0.19
FOXA1P55317 NME2P1-201ENST00000426182 414 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA1P55317 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA1P55317 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA1P55317 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.85□□□□□ -0.19
FOXA1P55317 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.85□□□□□ -0.19
FOXA1P55317 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA1P55317 AC022217.1-201ENST00000521069 738 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA1P55317 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.85□□□□□ -0.19
FOXA1P55317 AC003686.1-201ENST00000550956 1034 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 AL512310.5-201ENST00000551999 515 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 RNF41-210ENST00000552244 716 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA1P55317 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 AC005962.1-201ENST00000584100 773 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.85□□□□□ -0.19
FOXA1P55317 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
FOXA1P55317 AC090386.2-201ENST00000623010 1039 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 AL359845.1-201ENST00000458202 1648 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
FOXA1P55317 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
FOXA1P55317 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 TUBB4AP1-201ENST00000450755 1325 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 AC144522.1-201ENST00000625111 1658 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
FOXA1P55317 AC125807.2-201ENST00000513358 3514 ntBASIC13.85□□□□□ -0.19
FOXA1P55317 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.85□□□□□ -0.19
FOXA1P55317 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA1P55317 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
FOXA1P55317 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.84□□□□□ -0.19
FOXA1P55317 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 KRT18P15-201ENST00000458108 1291 ntBASIC13.84□□□□□ -0.19
FOXA1P55317 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
FOXA1P55317 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.84□□□□□ -0.19
FOXA1P55317 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA1P55317 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA1P55317 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.84□□□□□ -0.19
FOXA1P55317 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA1P55317 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 DDC-214ENST00000622873 1839 ntTSL 3 BASIC13.84□□□□□ -0.19
FOXA1P55317 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 DPP8-202ENST00000321147 3125 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
FOXA1P55317 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 AC007952.5-201ENST00000572818 1486 ntBASIC13.84□□□□□ -0.19
FOXA1P55317 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
FOXA1P55317 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms