Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFC3P40938 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFC3P40938 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.18□□□□□ -0.3
RFC3P40938 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFC3P40938 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.18□□□□□ -0.3
RFC3P40938 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFC3P40938 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFC3P40938 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
RFC3P40938 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
RFC3P40938 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 AHCYP4-201ENST00000419201 1315 ntBASIC13.17□□□□□ -0.3
RFC3P40938 AC006480.2-201ENST00000609770 1337 ntBASIC13.17□□□□□ -0.3
RFC3P40938 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 SLC29A1-201ENST00000371708 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 AL139385.1-201ENST00000611744 3272 ntBASIC13.17□□□□□ -0.3
RFC3P40938 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 MBP-201ENST00000354542 575 ntTSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 FXNP2-201ENST00000411625 547 ntBASIC13.17□□□□□ -0.3
RFC3P40938 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC13.17□□□□□ -0.3
RFC3P40938 MAGEA5-201ENST00000446757 942 ntBASIC13.17□□□□□ -0.3
RFC3P40938 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC13.17□□□□□ -0.3
RFC3P40938 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.17□□□□□ -0.3
RFC3P40938 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
RFC3P40938 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC13.17□□□□□ -0.3
RFC3P40938 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
RFC3P40938 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.16□□□□□ -0.3
RFC3P40938 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC13.16□□□□□ -0.3
RFC3P40938 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.16□□□□□ -0.3
RFC3P40938 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
RFC3P40938 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.16□□□□□ -0.3
RFC3P40938 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 AC087386.2-201ENST00000623212 4637 ntBASIC13.16□□□□□ -0.3
RFC3P40938 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.16□□□□□ -0.3
RFC3P40938 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.16□□□□□ -0.3
RFC3P40938 AL583805.1-201ENST00000391389 531 ntBASIC13.16□□□□□ -0.3
RFC3P40938 AL627231.1-201ENST00000394467 1125 ntBASIC13.16□□□□□ -0.3
RFC3P40938 LBH-202ENST00000401506 485 ntTSL 3 BASIC13.16□□□□□ -0.3
RFC3P40938 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.16□□□□□ -0.3
RFC3P40938 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC13.16□□□□□ -0.3
RFC3P40938 RN7SL277P-201ENST00000481521 288 ntBASIC13.16□□□□□ -0.3
RFC3P40938 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.16□□□□□ -0.3
RFC3P40938 AC027237.1-201ENST00000560942 655 ntBASIC13.16□□□□□ -0.3
RFC3P40938 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC13.16□□□□□ -0.3
RFC3P40938 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC13.16□□□□□ -0.3
RFC3P40938 AC128714.1-201ENST00000637035 887 ntBASIC13.16□□□□□ -0.3
RFC3P40938 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
RFC3P40938 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
RFC3P40938 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms