Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A3P12111 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
COL6A3P12111 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 IQCD-201ENST00000299732 1369 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 FCRLA-202ENST00000294796 766 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 FAM204A-202ENST00000369172 872 ntAPPRIS P1 TSL 3 BASIC14.22□□□□□ -0.13
COL6A3P12111 EXOSC1-210ENST00000485122 564 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A3P12111 AC106782.3-201ENST00000563429 258 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A3P12111 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
COL6A3P12111 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A3P12111 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 ZEB1-AS1-208ENST00000607166 2503 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 SERF2-210ENST00000409960 1032 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 PHKA1P1-201ENST00000420457 621 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 AL353997.3-201ENST00000586597 589 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 LINC01763-201ENST00000425185 1547 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A3P12111 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A3P12111 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 OR52L1-201ENST00000332249 1094 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
COL6A3P12111 CST11-202ENST00000377009 554 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 TULP3P1-202ENST00000453253 1291 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 AC067942.1-202ENST00000471756 1057 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 RN7SL483P-201ENST00000478417 285 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 ST3GAL1P1-201ENST00000513810 1014 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A3P12111 AC008915.2-201ENST00000570080 730 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A3P12111 AC025165.4-201ENST00000602327 433 ntBASIC14.22□□□□□ -0.13
COL6A3P12111 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 EPB42-203ENST00000540029 2098 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A3P12111 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A3P12111 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A3P12111 SMUG1-220ENST00000513838 2119 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 MRPL55-212ENST00000366739 641 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
COL6A3P12111 AC004884.1-201ENST00000393647 319 ntBASIC14.21□□□□□ -0.13
COL6A3P12111 LINC01128-201ENST00000415295 894 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 GAPDHP76-201ENST00000512278 976 ntBASIC14.21□□□□□ -0.13
COL6A3P12111 AC018362.2-202ENST00000567089 562 ntTSL 3 BASIC14.21□□□□□ -0.13
COL6A3P12111 MYL12A-206ENST00000578611 1004 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
COL6A3P12111 AC091132.3-201ENST00000579701 470 ntBASIC14.21□□□□□ -0.13
COL6A3P12111 AC138645.1-201ENST00000582765 470 ntBASIC14.21□□□□□ -0.13
COL6A3P12111 MIR4527HG-201ENST00000586905 675 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 TNFSF13-209ENST00000625791 955 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A3P12111 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A3P12111 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 CASC15-202ENST00000561912 1449 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A3P12111 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 SERPINB8-209ENST00000636430 1719 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A3P12111 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A3P12111 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A3P12111 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A3P12111 APOC3-201ENST00000227667 550 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A3P12111 TRGV4-201ENST00000390345 688 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
COL6A3P12111 ARF1P2-201ENST00000392493 538 ntBASIC14.21□□□□□ -0.14
COL6A3P12111 PDCD4-AS1-201ENST00000420367 778 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A3P12111 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
COL6A3P12111 AL161932.2-201ENST00000435436 679 ntBASIC14.21□□□□□ -0.14
COL6A3P12111 LINC01297-202ENST00000453395 624 ntTSL 5 BASIC14.21□□□□□ -0.14
COL6A3P12111 RN7SL789P-201ENST00000478944 293 ntBASIC14.21□□□□□ -0.14
COL6A3P12111 AC015909.2-201ENST00000523083 547 ntTSL 3 BASIC14.21□□□□□ -0.14
COL6A3P12111 IGHV1OR16-3-201ENST00000568138 205 ntBASIC14.21□□□□□ -0.14
COL6A3P12111 AP005121.2-201ENST00000583306 1101 ntBASIC14.21□□□□□ -0.14
COL6A3P12111 AC245748.2-201ENST00000588655 574 ntTSL 4 BASIC14.21□□□□□ -0.14
COL6A3P12111 AC092069.1-201ENST00000589120 270 ntTSL 3 BASIC14.21□□□□□ -0.14
COL6A3P12111 AC100788.1-201ENST00000591108 945 ntTSL 5 BASIC14.21□□□□□ -0.14
COL6A3P12111 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.21□□□□□ -0.14
COL6A3P12111 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.14
COL6A3P12111 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.21□□□□□ -0.14
COL6A3P12111 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.21□□□□□ -0.14
COL6A3P12111 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL6A3P12111 GSTA4-201ENST00000370959 793 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A3P12111 TPT1-203ENST00000379056 1101 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC14.2□□□□□ -0.14
COL6A3P12111 EEF1DP8-201ENST00000534760 536 ntBASIC14.2□□□□□ -0.14
COL6A3P12111 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A3P12111 GARS-210ENST00000627489 324 ntTSL 4 BASIC14.2□□□□□ -0.14
COL6A3P12111 NDRG2-201ENST00000298684 1784 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A3P12111 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A3P12111 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms