Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
VPS13CQ709C8 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
VPS13CQ709C8 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
VPS13CQ709C8 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
VPS13CQ709C8 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 MED15P3-201ENST00000413613 326 ntBASIC11.49□□□□□ -0.57
VPS13CQ709C8 AL137244.1-201ENST00000422931 865 ntBASIC11.49□□□□□ -0.57
VPS13CQ709C8 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 CETN3-205ENST00000522842 664 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 AC048380.1-201ENST00000589818 465 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 C10orf90-207ENST00000480379 1012 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 AC100858.1-201ENST00000514059 1228 ntBASIC11.49□□□□□ -0.57
VPS13CQ709C8 AC015818.3-201ENST00000583797 589 ntBASIC11.49□□□□□ -0.57
VPS13CQ709C8 AC022001.3-201ENST00000606330 596 ntBASIC11.49□□□□□ -0.57
VPS13CQ709C8 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 SHOC2-202ENST00000369452 3943 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC11.49□□□□□ -0.57
VPS13CQ709C8 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
VPS13CQ709C8 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 AL022332.1-202ENST00000432495 426 ntTSL 3 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 SLC37A3-201ENST00000326232 3349 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 IGLV3-9-201ENST00000390316 461 ntAPPRIS P1 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 FTH1P18-201ENST00000412071 549 ntBASIC11.48□□□□□ -0.57
VPS13CQ709C8 DDX11L8-201ENST00000535849 366 ntBASIC11.48□□□□□ -0.57
VPS13CQ709C8 AC112220.4-201ENST00000604982 1263 ntBASIC11.48□□□□□ -0.57
VPS13CQ709C8 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
VPS13CQ709C8 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC11.48□□□□□ -0.57
VPS13CQ709C8 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13CQ709C8 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13CQ709C8 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13CQ709C8 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC11.47□□□□□ -0.57
VPS13CQ709C8 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13CQ709C8 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC11.47□□□□□ -0.57
VPS13CQ709C8 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
VPS13CQ709C8 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms