Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
RNF4P78317 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RNF4P78317 Z99774.1-201ENST00000382641 2613 ntTSL 2 BASIC13.27□□□□□ -0.28
RNF4P78317 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RNF4P78317 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RNF4P78317 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.28
RNF4P78317 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC13.27□□□□□ -0.28
RNF4P78317 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
RNF4P78317 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.28
RNF4P78317 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.27□□□□□ -0.28
RNF4P78317 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.27□□□□□ -0.28
RNF4P78317 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
RNF4P78317 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.27□□□□□ -0.29
RNF4P78317 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.27□□□□□ -0.29
RNF4P78317 SUPT4H1P2-201ENST00000501248 353 ntBASIC13.27□□□□□ -0.29
RNF4P78317 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 AL512310.5-201ENST00000551999 515 ntBASIC13.27□□□□□ -0.29
RNF4P78317 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC13.27□□□□□ -0.29
RNF4P78317 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC13.27□□□□□ -0.29
RNF4P78317 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.27□□□□□ -0.29
RNF4P78317 LINC01783-202ENST00000614408 828 ntBASIC13.27□□□□□ -0.29
RNF4P78317 BX284668.2-205ENST00000619677 828 ntBASIC13.27□□□□□ -0.29
RNF4P78317 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 CICP20-201ENST00000443330 2801 ntBASIC13.27□□□□□ -0.29
RNF4P78317 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.27□□□□□ -0.29
RNF4P78317 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.27□□□□□ -0.29
RNF4P78317 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
RNF4P78317 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
RNF4P78317 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
RNF4P78317 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
RNF4P78317 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC13.26□□□□□ -0.29
RNF4P78317 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
RNF4P78317 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
RNF4P78317 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.26□□□□□ -0.29
RNF4P78317 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC13.26□□□□□ -0.29
RNF4P78317 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC13.26□□□□□ -0.29
RNF4P78317 RPS9P1-201ENST00000419943 583 ntBASIC13.26□□□□□ -0.29
RNF4P78317 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC13.26□□□□□ -0.29
RNF4P78317 RN7SL258P-201ENST00000478664 300 ntBASIC13.26□□□□□ -0.29
RNF4P78317 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC13.26□□□□□ -0.29
RNF4P78317 RN7SL720P-201ENST00000488178 304 ntBASIC13.26□□□□□ -0.29
RNF4P78317 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC13.26□□□□□ -0.29
RNF4P78317 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 AC008723.1-201ENST00000506922 207 ntBASIC13.26□□□□□ -0.29
RNF4P78317 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 RTN3P1-201ENST00000536295 711 ntBASIC13.26□□□□□ -0.29
RNF4P78317 AC242376.1-201ENST00000559033 726 ntBASIC13.26□□□□□ -0.29
RNF4P78317 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
RNF4P78317 MIR4754-201ENST00000582477 89 ntBASIC13.26□□□□□ -0.29
RNF4P78317 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC13.26□□□□□ -0.29
RNF4P78317 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
RNF4P78317 AL109837.1-201ENST00000603272 613 ntBASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms