Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC100858.1-201ENST00000514059 1228 ntBASIC14.31□□□□□ -0.12
VCANP13611 AP001107.9-202ENST00000531602 613 ntTSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 PHBP18-201ENST00000546648 813 ntBASIC14.31□□□□□ -0.12
VCANP13611 AL603832.3-203ENST00000606505 813 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
VCANP13611 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.31□□□□□ -0.12
VCANP13611 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
VCANP13611 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 AC015909.5-201ENST00000624336 2266 ntBASIC14.31□□□□□ -0.12
VCANP13611 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC14.31□□□□□ -0.12
VCANP13611 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 AC009779.7-201ENST00000609031 469 ntBASIC14.31□□□□□ -0.12
VCANP13611 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
VCANP13611 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.31□□□□□ -0.12
VCANP13611 MIR100HG-219ENST00000533109 1794 ntTSL 5 BASIC14.31□□□□□ -0.12
VCANP13611 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
VCANP13611 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
VCANP13611 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.3□□□□□ -0.12
VCANP13611 MIR378I-201ENST00000582688 76 ntBASIC14.3□□□□□ -0.12
VCANP13611 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC14.3□□□□□ -0.12
VCANP13611 RBP1-206ENST00000617459 667 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC14.3□□□□□ -0.12
VCANP13611 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
VCANP13611 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC14.3□□□□□ -0.12
VCANP13611 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 AC118758.1-201ENST00000448242 564 ntTSL 4 BASIC14.3□□□□□ -0.12
VCANP13611 Z69706.1-201ENST00000595428 547 ntBASIC14.3□□□□□ -0.12
VCANP13611 AC011479.2-201ENST00000598146 432 ntTSL 3 BASIC14.3□□□□□ -0.12
VCANP13611 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
VCANP13611 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.3□□□□□ -0.12
VCANP13611 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.3□□□□□ -0.12
VCANP13611 SNU13-201ENST00000215956 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC14.3□□□□□ -0.12
VCANP13611 MOG-229ENST00000483013 279 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 RANBP6-202ENST00000485372 1000 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 MOG-232ENST00000490427 327 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
VCANP13611 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.3□□□□□ -0.12
VCANP13611 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC14.3□□□□□ -0.12
VCANP13611 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC14.29□□□□□ -0.12
VCANP13611 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 AC064850.1-201ENST00000413279 1398 ntBASIC14.29□□□□□ -0.12
VCANP13611 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 RN7SL111P-201ENST00000468841 285 ntBASIC14.29□□□□□ -0.12
VCANP13611 HNRNPA1P11-201ENST00000580106 956 ntBASIC14.29□□□□□ -0.12
VCANP13611 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 AC245369.8-201ENST00000636589 306 ntBASIC14.29□□□□□ -0.12
VCANP13611 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VCANP13611 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.29□□□□□ -0.12
VCANP13611 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
VCANP13611 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.29□□□□□ -0.12
VCANP13611 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC14.29□□□□□ -0.12
VCANP13611 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms