Protein–RNA interactions for Protein: Q9H347

UBQLN3, Ubiquilin-3, humanhuman

Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN3Q9H347 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
UBQLN3Q9H347 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.89■□□□□ 0.93
UBQLN3Q9H347 AL022069.1-201ENST00000568025 1636 ntBASIC20.89■□□□□ 0.93
UBQLN3Q9H347 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
UBQLN3Q9H347 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
UBQLN3Q9H347 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
UBQLN3Q9H347 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBQLN3Q9H347 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.87■□□□□ 0.93
UBQLN3Q9H347 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.87■□□□□ 0.93
UBQLN3Q9H347 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.87■□□□□ 0.93
UBQLN3Q9H347 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBQLN3Q9H347 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
UBQLN3Q9H347 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
UBQLN3Q9H347 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 AL356740.2-201ENST00000601559 647 ntBASIC20.86■□□□□ 0.93
UBQLN3Q9H347 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
UBQLN3Q9H347 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 AC131281.2-201ENST00000520478 145 ntBASIC20.85■□□□□ 0.93
UBQLN3Q9H347 SRR-208ENST00000576848 588 ntTSL 4 BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 AL161729.1-201ENST00000604104 1402 ntBASIC20.85■□□□□ 0.93
UBQLN3Q9H347 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
UBQLN3Q9H347 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.84■□□□□ 0.93
UBQLN3Q9H347 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
UBQLN3Q9H347 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
UBQLN3Q9H347 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
UBQLN3Q9H347 AC008406.3-201ENST00000620001 1374 ntBASIC20.83■□□□□ 0.92
UBQLN3Q9H347 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
UBQLN3Q9H347 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
UBQLN3Q9H347 C9orf163-202ENST00000624034 2573 ntBASIC20.83■□□□□ 0.92
UBQLN3Q9H347 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.82■□□□□ 0.92
UBQLN3Q9H347 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 AL512631.2-201ENST00000604634 923 ntBASIC20.81■□□□□ 0.92
UBQLN3Q9H347 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBQLN3Q9H347 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBQLN3Q9H347 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBQLN3Q9H347 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms