Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.69■■□□□ 1.54
LRCH3Q96II8 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LRCH3Q96II8 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
LRCH3Q96II8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.68■■□□□ 1.54
LRCH3Q96II8 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
LRCH3Q96II8 HSCB-202ENST00000398941 955 ntTSL 2 BASIC24.68■■□□□ 1.54
LRCH3Q96II8 GAMT-205ENST00000640762 751 ntTSL 5 BASIC24.68■■□□□ 1.54
LRCH3Q96II8 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC24.68■■□□□ 1.54
LRCH3Q96II8 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
LRCH3Q96II8 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
LRCH3Q96II8 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
LRCH3Q96II8 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC24.67■■□□□ 1.54
LRCH3Q96II8 MIR663A-201ENST00000385250 93 ntBASIC24.67■■□□□ 1.54
LRCH3Q96II8 AP005435.1-201ENST00000529293 1178 ntBASIC24.67■■□□□ 1.54
LRCH3Q96II8 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.67■■□□□ 1.54
LRCH3Q96II8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.67■■□□□ 1.54
LRCH3Q96II8 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC24.67■■□□□ 1.54
LRCH3Q96II8 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC24.67■■□□□ 1.54
LRCH3Q96II8 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
LRCH3Q96II8 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
LRCH3Q96II8 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
LRCH3Q96II8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC24.66■■□□□ 1.54
LRCH3Q96II8 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
LRCH3Q96II8 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC24.66■■□□□ 1.54
LRCH3Q96II8 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
LRCH3Q96II8 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC24.65■■□□□ 1.54
LRCH3Q96II8 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.65■■□□□ 1.54
LRCH3Q96II8 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC24.65■■□□□ 1.54
LRCH3Q96II8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
LRCH3Q96II8 AC142086.2-201ENST00000569753 217 ntBASIC24.65■■□□□ 1.54
LRCH3Q96II8 AC087239.1-201ENST00000622671 572 ntBASIC24.65■■□□□ 1.54
LRCH3Q96II8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
LRCH3Q96II8 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
LRCH3Q96II8 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
LRCH3Q96II8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC24.64■■□□□ 1.54
LRCH3Q96II8 FAM201B-201ENST00000458407 597 ntBASIC24.64■■□□□ 1.54
LRCH3Q96II8 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC24.64■■□□□ 1.54
LRCH3Q96II8 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC24.64■■□□□ 1.54
LRCH3Q96II8 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
LRCH3Q96II8 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
LRCH3Q96II8 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
LRCH3Q96II8 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
LRCH3Q96II8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC24.63■■□□□ 1.53
LRCH3Q96II8 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LRCH3Q96II8 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LRCH3Q96II8 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
LRCH3Q96II8 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LRCH3Q96II8 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LRCH3Q96II8 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
LRCH3Q96II8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
LRCH3Q96II8 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC24.63■■□□□ 1.53
LRCH3Q96II8 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC24.63■■□□□ 1.53
LRCH3Q96II8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC24.63■■□□□ 1.53
LRCH3Q96II8 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
LRCH3Q96II8 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
LRCH3Q96II8 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LRCH3Q96II8 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LRCH3Q96II8 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
LRCH3Q96II8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC24.62■■□□□ 1.53
LRCH3Q96II8 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.62■■□□□ 1.53
LRCH3Q96II8 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC24.62■■□□□ 1.53
LRCH3Q96II8 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
LRCH3Q96II8 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.62■■□□□ 1.53
LRCH3Q96II8 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
LRCH3Q96II8 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
LRCH3Q96II8 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
LRCH3Q96II8 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
LRCH3Q96II8 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC24.61■■□□□ 1.53
LRCH3Q96II8 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.61■■□□□ 1.53
LRCH3Q96II8 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC24.61■■□□□ 1.53
LRCH3Q96II8 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.61■■□□□ 1.53
LRCH3Q96II8 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
LRCH3Q96II8 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC24.61■■□□□ 1.53
LRCH3Q96II8 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
LRCH3Q96II8 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
LRCH3Q96II8 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.6■■□□□ 1.53
LRCH3Q96II8 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC24.6■■□□□ 1.53
LRCH3Q96II8 pRNA.6-201ENST00000610482 90 ntBASIC24.6■■□□□ 1.53
LRCH3Q96II8 pRNA.5-201ENST00000612139 90 ntBASIC24.6■■□□□ 1.53
LRCH3Q96II8 pRNA.11-201ENST00000618423 90 ntBASIC24.6■■□□□ 1.53
LRCH3Q96II8 pRNA.13-201ENST00000619112 90 ntBASIC24.6■■□□□ 1.53
LRCH3Q96II8 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
LRCH3Q96II8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
LRCH3Q96II8 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
LRCH3Q96II8 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
LRCH3Q96II8 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
LRCH3Q96II8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC24.59■■□□□ 1.53
LRCH3Q96II8 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
LRCH3Q96II8 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
LRCH3Q96II8 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC24.58■■□□□ 1.53
LRCH3Q96II8 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC24.58■■□□□ 1.53
LRCH3Q96II8 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC24.58■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms