Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CSPG4Q6UVK1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 KRT18P14-201ENST00000534205 1250 ntBASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 AC012414.1-201ENST00000556676 535 ntBASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CSPG4Q6UVK1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 AICDA-202ENST00000537228 667 ntTSL 5 BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CSPG4Q6UVK1 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CSPG4Q6UVK1 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CSPG4Q6UVK1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.71■□□□□ 0.59
CSPG4Q6UVK1 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.71■□□□□ 0.59
CSPG4Q6UVK1 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.71■□□□□ 0.59
CSPG4Q6UVK1 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CSPG4Q6UVK1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CSPG4Q6UVK1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.71■□□□□ 0.58
CSPG4Q6UVK1 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.71■□□□□ 0.58
CSPG4Q6UVK1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 CEBPA-AS1-201ENST00000592982 2198 ntBASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CSPG4Q6UVK1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 CDCA4P2-201ENST00000441182 718 ntBASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 MIR6084-201ENST00000622012 110 ntBASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CSPG4Q6UVK1 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 TMEM191A-211ENST00000637163 1067 ntBASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 AL022069.1-201ENST00000568025 1636 ntBASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.68■□□□□ 0.58
CSPG4Q6UVK1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 AC091060.1-201ENST00000623524 1766 ntBASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.67■□□□□ 0.58
CSPG4Q6UVK1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CSPG4Q6UVK1 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms