Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 TMEM191A-211ENST00000637163 1067 ntBASIC21.65■■□□□ 1.06
COL28A1Q2UY09 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC21.65■■□□□ 1.06
COL28A1Q2UY09 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL28A1Q2UY09 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL28A1Q2UY09 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL28A1Q2UY09 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 MPST-208ENST00000628507 698 ntTSL 5 BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
COL28A1Q2UY09 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 AC233992.3-201ENST00000607491 485 ntBASIC21.62■■□□□ 1.05
COL28A1Q2UY09 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 AC066615.1-201ENST00000640911 628 ntBASIC21.62■■□□□ 1.05
COL28A1Q2UY09 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.62■■□□□ 1.05
COL28A1Q2UY09 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 AC245100.8-202ENST00000629247 1058 ntBASIC21.61■■□□□ 1.05
COL28A1Q2UY09 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL28A1Q2UY09 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 AC005703.6-201ENST00000623265 1329 ntBASIC21.6■■□□□ 1.05
COL28A1Q2UY09 AC020928.2-201ENST00000588717 2197 ntBASIC21.6■■□□□ 1.05
COL28A1Q2UY09 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL28A1Q2UY09 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL28A1Q2UY09 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL28A1Q2UY09 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL28A1Q2UY09 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL28A1Q2UY09 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
COL28A1Q2UY09 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.58■■□□□ 1.05
COL28A1Q2UY09 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
COL28A1Q2UY09 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.58■■□□□ 1.05
COL28A1Q2UY09 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.58■■□□□ 1.04
COL28A1Q2UY09 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL28A1Q2UY09 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.57■■□□□ 1.04
COL28A1Q2UY09 HES6-206ENST00000409574 738 ntTSL 2 BASIC21.57■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms