Protein–RNA interactions for Protein: P55055

NR1H2, Oxysterols receptor LXR-beta, humanhuman

Predictions only

Length 460 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H2P55055 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
NR1H2P55055 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
NR1H2P55055 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
NR1H2P55055 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.25■□□□□ 0.99
NR1H2P55055 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 AC139795.1-202ENST00000500444 432 ntBASIC21.25■□□□□ 0.99
NR1H2P55055 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.25■□□□□ 0.99
NR1H2P55055 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
NR1H2P55055 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.25■□□□□ 0.99
NR1H2P55055 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.25■□□□□ 0.99
NR1H2P55055 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.25■□□□□ 0.99
NR1H2P55055 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
NR1H2P55055 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NR1H2P55055 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NR1H2P55055 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.24■□□□□ 0.99
NR1H2P55055 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
NR1H2P55055 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.24■□□□□ 0.99
NR1H2P55055 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.24■□□□□ 0.99
NR1H2P55055 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.24■□□□□ 0.99
NR1H2P55055 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
NR1H2P55055 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
NR1H2P55055 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NR1H2P55055 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NR1H2P55055 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
NR1H2P55055 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
NR1H2P55055 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
NR1H2P55055 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
NR1H2P55055 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.23■□□□□ 0.99
NR1H2P55055 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.23■□□□□ 0.99
NR1H2P55055 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.23■□□□□ 0.99
NR1H2P55055 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.23■□□□□ 0.99
NR1H2P55055 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
NR1H2P55055 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.23■□□□□ 0.99
NR1H2P55055 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
NR1H2P55055 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
NR1H2P55055 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.22■□□□□ 0.99
NR1H2P55055 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.22■□□□□ 0.99
NR1H2P55055 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.22■□□□□ 0.99
NR1H2P55055 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.22■□□□□ 0.99
NR1H2P55055 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.22■□□□□ 0.99
NR1H2P55055 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
NR1H2P55055 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
NR1H2P55055 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.21■□□□□ 0.99
NR1H2P55055 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NR1H2P55055 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NR1H2P55055 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
NR1H2P55055 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NR1H2P55055 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.21■□□□□ 0.99
NR1H2P55055 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
NR1H2P55055 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NR1H2P55055 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
NR1H2P55055 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
NR1H2P55055 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NR1H2P55055 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
NR1H2P55055 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.2■□□□□ 0.98
NR1H2P55055 SPCS2P3-201ENST00000500401 656 ntBASIC21.2■□□□□ 0.98
NR1H2P55055 MIR6089-201ENST00000616698 64 ntBASIC21.2■□□□□ 0.98
NR1H2P55055 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.2■□□□□ 0.98
NR1H2P55055 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.2■□□□□ 0.98
NR1H2P55055 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NR1H2P55055 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NR1H2P55055 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NR1H2P55055 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NR1H2P55055 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NR1H2P55055 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
NR1H2P55055 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.19■□□□□ 0.98
NR1H2P55055 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.19■□□□□ 0.98
NR1H2P55055 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.19■□□□□ 0.98
NR1H2P55055 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.19■□□□□ 0.98
NR1H2P55055 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.19■□□□□ 0.98
NR1H2P55055 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NR1H2P55055 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.18■□□□□ 0.98
NR1H2P55055 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NR1H2P55055 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
NR1H2P55055 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NR1H2P55055 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms