Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC31.78■■■□□ 2.68
MSH6P52701 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
MSH6P52701 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC31.78■■■□□ 2.68
MSH6P52701 AL022069.1-201ENST00000568025 1636 ntBASIC31.77■■■□□ 2.68
MSH6P52701 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
MSH6P52701 AL355802.2-201ENST00000402069 882 ntBASIC31.77■■■□□ 2.68
MSH6P52701 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
MSH6P52701 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
MSH6P52701 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
MSH6P52701 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
MSH6P52701 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.77■■■□□ 2.68
MSH6P52701 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.68
MSH6P52701 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
MSH6P52701 PPP1R14BP3-201ENST00000509033 445 ntBASIC31.76■■■□□ 2.67
MSH6P52701 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
MSH6P52701 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC31.76■■■□□ 2.67
MSH6P52701 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC31.76■■■□□ 2.67
MSH6P52701 GAS2L1P2-201ENST00000436355 1356 ntBASIC31.75■■■□□ 2.67
MSH6P52701 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC31.75■■■□□ 2.67
MSH6P52701 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
MSH6P52701 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC31.75■■■□□ 2.67
MSH6P52701 AC016769.1-201ENST00000409132 1010 ntBASIC31.75■■■□□ 2.67
MSH6P52701 KRT18P61-201ENST00000585825 1298 ntBASIC31.75■■■□□ 2.67
MSH6P52701 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC31.75■■■□□ 2.67
MSH6P52701 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
MSH6P52701 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC31.75■■■□□ 2.67
MSH6P52701 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
MSH6P52701 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC31.74■■■□□ 2.67
MSH6P52701 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC31.74■■■□□ 2.67
MSH6P52701 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC31.74■■■□□ 2.67
MSH6P52701 AC026185.1-201ENST00000445748 174 ntBASIC31.74■■■□□ 2.67
MSH6P52701 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
MSH6P52701 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC31.74■■■□□ 2.67
MSH6P52701 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC31.74■■■□□ 2.67
MSH6P52701 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC31.74■■■□□ 2.67
MSH6P52701 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC31.73■■■□□ 2.67
MSH6P52701 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC31.73■■■□□ 2.67
MSH6P52701 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC31.73■■■□□ 2.67
MSH6P52701 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
MSH6P52701 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC31.72■■■□□ 2.67
MSH6P52701 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
MSH6P52701 NT5C3AP1-201ENST00000394500 1012 ntBASIC31.72■■■□□ 2.67
MSH6P52701 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC31.72■■■□□ 2.67
MSH6P52701 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC31.72■■■□□ 2.67
MSH6P52701 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
MSH6P52701 AC137761.2-201ENST00000561729 223 ntBASIC31.72■■■□□ 2.67
MSH6P52701 AC145350.3-201ENST00000569033 163 ntBASIC31.72■■■□□ 2.67
MSH6P52701 AC066615.1-201ENST00000640911 628 ntBASIC31.72■■■□□ 2.67
MSH6P52701 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
MSH6P52701 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC31.71■■■□□ 2.67
MSH6P52701 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
MSH6P52701 MAP2K4P1-201ENST00000438453 1195 ntBASIC31.71■■■□□ 2.67
MSH6P52701 ERN1-208ENST00000606895 2068 ntBASIC31.71■■■□□ 2.67
MSH6P52701 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC31.71■■■□□ 2.67
MSH6P52701 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC31.7■■■□□ 2.67
MSH6P52701 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
MSH6P52701 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC31.7■■■□□ 2.67
MSH6P52701 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
MSH6P52701 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
MSH6P52701 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC31.69■■■□□ 2.66
MSH6P52701 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.69■■■□□ 2.66
MSH6P52701 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
MSH6P52701 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.69■■■□□ 2.66
MSH6P52701 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.69■■■□□ 2.66
MSH6P52701 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
MSH6P52701 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC31.68■■■□□ 2.66
MSH6P52701 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC31.68■■■□□ 2.66
MSH6P52701 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC31.68■■■□□ 2.66
MSH6P52701 AL109923.1-201ENST00000618799 583 ntBASIC31.68■■■□□ 2.66
MSH6P52701 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
MSH6P52701 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
MSH6P52701 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC31.68■■■□□ 2.66
MSH6P52701 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
MSH6P52701 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC31.68■■■□□ 2.66
MSH6P52701 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
MSH6P52701 AC006970.2-201ENST00000450065 779 ntBASIC31.68■■■□□ 2.66
MSH6P52701 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC31.68■■■□□ 2.66
MSH6P52701 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC31.68■■■□□ 2.66
MSH6P52701 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC31.68■■■□□ 2.66
MSH6P52701 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC31.68■■■□□ 2.66
MSH6P52701 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
MSH6P52701 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
MSH6P52701 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
MSH6P52701 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC31.67■■■□□ 2.66
MSH6P52701 MPST-204ENST00000404393 1329 ntTSL 5 BASIC31.67■■■□□ 2.66
MSH6P52701 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
MSH6P52701 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC31.67■■■□□ 2.66
MSH6P52701 LHPP-203ENST00000392757 840 ntTSL 3 BASIC31.67■■■□□ 2.66
MSH6P52701 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC31.67■■■□□ 2.66
MSH6P52701 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC31.67■■■□□ 2.66
MSH6P52701 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
MSH6P52701 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
MSH6P52701 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
MSH6P52701 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
MSH6P52701 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
MSH6P52701 HSCB-202ENST00000398941 955 ntTSL 2 BASIC31.66■■■□□ 2.66
MSH6P52701 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC31.66■■■□□ 2.66
MSH6P52701 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC31.66■■■□□ 2.66
MSH6P52701 AC141586.4-201ENST00000624558 1573 ntBASIC31.65■■■□□ 2.66
MSH6P52701 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms