Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 MIR6089-201ENST00000616698 64 ntBASIC29.65■■■□□ 2.34
PRIM1P49642 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC29.65■■■□□ 2.34
PRIM1P49642 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC29.65■■■□□ 2.34
PRIM1P49642 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
PRIM1P49642 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC29.64■■■□□ 2.34
PRIM1P49642 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC29.64■■■□□ 2.33
PRIM1P49642 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.33
PRIM1P49642 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRIM1P49642 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
PRIM1P49642 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC29.63■■■□□ 2.33
PRIM1P49642 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.63■■■□□ 2.33
PRIM1P49642 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC29.63■■■□□ 2.33
PRIM1P49642 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC29.63■■■□□ 2.33
PRIM1P49642 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRIM1P49642 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRIM1P49642 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC29.63■■■□□ 2.33
PRIM1P49642 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
PRIM1P49642 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
PRIM1P49642 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC29.62■■■□□ 2.33
PRIM1P49642 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
PRIM1P49642 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC29.62■■■□□ 2.33
PRIM1P49642 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
PRIM1P49642 DLX3-202ENST00000512495 834 ntTSL 2 BASIC29.62■■■□□ 2.33
PRIM1P49642 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC29.62■■■□□ 2.33
PRIM1P49642 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
PRIM1P49642 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
PRIM1P49642 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC29.61■■■□□ 2.33
PRIM1P49642 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC29.61■■■□□ 2.33
PRIM1P49642 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PRIM1P49642 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
PRIM1P49642 AC027612.3-201ENST00000413684 1047 ntBASIC29.61■■■□□ 2.33
PRIM1P49642 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC29.61■■■□□ 2.33
PRIM1P49642 MIR6084-201ENST00000622012 110 ntBASIC29.61■■■□□ 2.33
PRIM1P49642 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC29.6■■■□□ 2.33
PRIM1P49642 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC29.6■■■□□ 2.33
PRIM1P49642 AC123595.1-201ENST00000440769 1046 ntBASIC29.6■■■□□ 2.33
PRIM1P49642 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC29.6■■■□□ 2.33
PRIM1P49642 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC29.6■■■□□ 2.33
PRIM1P49642 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC29.6■■■□□ 2.33
PRIM1P49642 AL358852.1-201ENST00000623174 1268 ntBASIC29.6■■■□□ 2.33
PRIM1P49642 LSR-205ENST00000427250 1606 ntTSL 2 BASIC29.6■■■□□ 2.33
PRIM1P49642 USF2-207ENST00000595068 1612 ntTSL 5 BASIC29.6■■■□□ 2.33
PRIM1P49642 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC29.59■■■□□ 2.33
PRIM1P49642 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC29.59■■■□□ 2.33
PRIM1P49642 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC29.59■■■□□ 2.33
PRIM1P49642 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC29.59■■■□□ 2.33
PRIM1P49642 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
PRIM1P49642 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
PRIM1P49642 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC29.58■■■□□ 2.33
PRIM1P49642 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
PRIM1P49642 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
PRIM1P49642 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
PRIM1P49642 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC29.58■■■□□ 2.33
PRIM1P49642 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC29.58■■■□□ 2.33
PRIM1P49642 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC29.57■■■□□ 2.32
PRIM1P49642 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC29.57■■■□□ 2.32
PRIM1P49642 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
PRIM1P49642 ID1-201ENST00000376105 1233 ntBASIC29.57■■■□□ 2.32
PRIM1P49642 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC29.57■■■□□ 2.32
PRIM1P49642 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
PRIM1P49642 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC29.56■■■□□ 2.32
PRIM1P49642 AICDA-202ENST00000537228 667 ntTSL 5 BASIC29.56■■■□□ 2.32
PRIM1P49642 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC29.55■■■□□ 2.32
PRIM1P49642 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
PRIM1P49642 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC29.55■■■□□ 2.32
PRIM1P49642 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC29.55■■■□□ 2.32
PRIM1P49642 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC29.55■■■□□ 2.32
PRIM1P49642 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
PRIM1P49642 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC29.55■■■□□ 2.32
PRIM1P49642 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC29.54■■■□□ 2.32
PRIM1P49642 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
PRIM1P49642 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC29.54■■■□□ 2.32
PRIM1P49642 CCDC92B-201ENST00000575506 885 ntBASIC29.54■■■□□ 2.32
PRIM1P49642 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC29.54■■■□□ 2.32
PRIM1P49642 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
PRIM1P49642 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
PRIM1P49642 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
PRIM1P49642 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC29.53■■■□□ 2.32
PRIM1P49642 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
PRIM1P49642 MIR572-201ENST00000384983 95 ntBASIC29.53■■■□□ 2.32
PRIM1P49642 IGHV3-19-201ENST00000521488 291 ntBASIC29.53■■■□□ 2.32
PRIM1P49642 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC29.53■■■□□ 2.32
PRIM1P49642 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
PRIM1P49642 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC29.53■■■□□ 2.32
PRIM1P49642 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
PRIM1P49642 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 GXYLT1P2-201ENST00000433312 1230 ntBASIC29.52■■■□□ 2.32
PRIM1P49642 DENND3-207ENST00000518347 850 ntTSL 2 BASIC29.52■■■□□ 2.32
PRIM1P49642 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC29.52■■■□□ 2.32
PRIM1P49642 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
PRIM1P49642 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC29.51■■■□□ 2.31
PRIM1P49642 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC29.51■■■□□ 2.31
PRIM1P49642 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC29.51■■■□□ 2.31
PRIM1P49642 AC012414.1-201ENST00000556676 535 ntBASIC29.51■■■□□ 2.31
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms