Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC30.36■■■□□ 2.45
COL18A1P39060 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL18A1P39060 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
COL18A1P39060 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
COL18A1P39060 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC30.36■■■□□ 2.45
COL18A1P39060 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC30.36■■■□□ 2.45
COL18A1P39060 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL18A1P39060 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
COL18A1P39060 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.35■■■□□ 2.45
COL18A1P39060 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
COL18A1P39060 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC30.35■■■□□ 2.45
COL18A1P39060 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC30.35■■■□□ 2.45
COL18A1P39060 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC30.35■■■□□ 2.45
COL18A1P39060 CCDC92B-201ENST00000575506 885 ntBASIC30.35■■■□□ 2.45
COL18A1P39060 MIR6084-201ENST00000622012 110 ntBASIC30.35■■■□□ 2.45
COL18A1P39060 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC30.35■■■□□ 2.45
COL18A1P39060 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
COL18A1P39060 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.34■■■□□ 2.45
COL18A1P39060 AL161729.1-201ENST00000604104 1402 ntBASIC30.34■■■□□ 2.45
COL18A1P39060 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
COL18A1P39060 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.34■■■□□ 2.45
COL18A1P39060 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.34■■■□□ 2.45
COL18A1P39060 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.34■■■□□ 2.45
COL18A1P39060 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC30.34■■■□□ 2.45
COL18A1P39060 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC30.33■■■□□ 2.45
COL18A1P39060 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
COL18A1P39060 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.33■■■□□ 2.45
COL18A1P39060 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL18A1P39060 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.33■■■□□ 2.45
COL18A1P39060 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL18A1P39060 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC30.33■■■□□ 2.45
COL18A1P39060 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
COL18A1P39060 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
COL18A1P39060 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC30.32■■■□□ 2.44
COL18A1P39060 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC30.32■■■□□ 2.44
COL18A1P39060 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC30.32■■■□□ 2.44
COL18A1P39060 AC010525.1-201ENST00000585559 441 ntBASIC30.32■■■□□ 2.44
COL18A1P39060 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL18A1P39060 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC30.32■■■□□ 2.44
COL18A1P39060 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC30.32■■■□□ 2.44
COL18A1P39060 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
COL18A1P39060 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC30.31■■■□□ 2.44
COL18A1P39060 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.31■■■□□ 2.44
COL18A1P39060 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC30.31■■■□□ 2.44
COL18A1P39060 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL18A1P39060 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
COL18A1P39060 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC30.31■■■□□ 2.44
COL18A1P39060 KRT18P14-201ENST00000534205 1250 ntBASIC30.31■■■□□ 2.44
COL18A1P39060 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL18A1P39060 TERF1P2-201ENST00000583350 1212 ntBASIC30.31■■■□□ 2.44
COL18A1P39060 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL18A1P39060 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
COL18A1P39060 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC30.31■■■□□ 2.44
COL18A1P39060 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
COL18A1P39060 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC30.31■■■□□ 2.44
COL18A1P39060 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.3■■■□□ 2.44
COL18A1P39060 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC30.3■■■□□ 2.44
COL18A1P39060 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
COL18A1P39060 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL18A1P39060 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC30.3■■■□□ 2.44
COL18A1P39060 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
COL18A1P39060 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC30.3■■■□□ 2.44
COL18A1P39060 DENND3-207ENST00000518347 850 ntTSL 2 BASIC30.3■■■□□ 2.44
COL18A1P39060 AC141586.4-201ENST00000624558 1573 ntBASIC30.3■■■□□ 2.44
COL18A1P39060 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
COL18A1P39060 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL18A1P39060 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
COL18A1P39060 AL354811.1-201ENST00000610286 706 ntBASIC30.29■■■□□ 2.44
COL18A1P39060 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
COL18A1P39060 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
COL18A1P39060 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL18A1P39060 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL18A1P39060 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC30.28■■■□□ 2.44
COL18A1P39060 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC30.28■■■□□ 2.44
COL18A1P39060 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC30.28■■■□□ 2.44
COL18A1P39060 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
COL18A1P39060 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC30.28■■■□□ 2.44
COL18A1P39060 NME4-202ENST00000382940 766 ntTSL 3 BASIC30.28■■■□□ 2.44
COL18A1P39060 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC30.28■■■□□ 2.44
COL18A1P39060 NME4-211ENST00000620944 1193 ntTSL 2 BASIC30.28■■■□□ 2.44
COL18A1P39060 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
COL18A1P39060 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL18A1P39060 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL18A1P39060 DLX3-202ENST00000512495 834 ntTSL 2 BASIC30.27■■■□□ 2.44
COL18A1P39060 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC30.27■■■□□ 2.44
COL18A1P39060 ALDH1A3-203ENST00000557963 1670 ntBASIC30.27■■■□□ 2.44
COL18A1P39060 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL18A1P39060 HLA-L-211ENST00000482052 1765 ntBASIC30.27■■■□□ 2.44
COL18A1P39060 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC30.27■■■□□ 2.44
COL18A1P39060 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
COL18A1P39060 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
COL18A1P39060 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC30.26■■■□□ 2.44
COL18A1P39060 AC004911.1-201ENST00000416316 871 ntBASIC30.26■■■□□ 2.44
COL18A1P39060 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC30.26■■■□□ 2.44
COL18A1P39060 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL18A1P39060 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL18A1P39060 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL18A1P39060 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
COL18A1P39060 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC30.26■■■□□ 2.43
COL18A1P39060 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC30.26■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms