Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CIITAP33076 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.57■■□□□ 1.68
CIITAP33076 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
CIITAP33076 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CIITAP33076 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.57■■□□□ 1.68
CIITAP33076 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CIITAP33076 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
CIITAP33076 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CIITAP33076 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CIITAP33076 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CIITAP33076 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC25.56■■□□□ 1.68
CIITAP33076 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC25.56■■□□□ 1.68
CIITAP33076 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.56■■□□□ 1.68
CIITAP33076 NKILA-201ENST00000613231 537 ntTSL 4 BASIC25.56■■□□□ 1.68
CIITAP33076 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.56■■□□□ 1.68
CIITAP33076 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CIITAP33076 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.56■■□□□ 1.68
CIITAP33076 VGF-203ENST00000611537 1622 ntTSL 5 BASIC25.55■■□□□ 1.68
CIITAP33076 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CIITAP33076 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
CIITAP33076 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CIITAP33076 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.55■■□□□ 1.68
CIITAP33076 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CIITAP33076 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
CIITAP33076 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CIITAP33076 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CIITAP33076 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC25.54■■□□□ 1.68
CIITAP33076 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CIITAP33076 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
CIITAP33076 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
CIITAP33076 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.54■■□□□ 1.68
CIITAP33076 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CIITAP33076 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CIITAP33076 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.53■■□□□ 1.68
CIITAP33076 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CIITAP33076 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CIITAP33076 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC25.52■■□□□ 1.68
CIITAP33076 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC25.52■■□□□ 1.68
CIITAP33076 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CIITAP33076 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
CIITAP33076 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.52■■□□□ 1.68
CIITAP33076 ASB1-202ENST00000409297 878 ntTSL 5 BASIC25.52■■□□□ 1.68
CIITAP33076 AC241377.3-202ENST00000626088 1088 ntBASIC25.52■■□□□ 1.68
CIITAP33076 AC241585.3-202ENST00000628937 1088 ntBASIC25.52■■□□□ 1.68
CIITAP33076 AC245100.8-202ENST00000629247 1058 ntBASIC25.52■■□□□ 1.68
CIITAP33076 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.52■■□□□ 1.68
CIITAP33076 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CIITAP33076 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.68
CIITAP33076 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CIITAP33076 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CIITAP33076 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CIITAP33076 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CIITAP33076 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CIITAP33076 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC25.51■■□□□ 1.67
CIITAP33076 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
CIITAP33076 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CIITAP33076 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.51■■□□□ 1.67
CIITAP33076 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CIITAP33076 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CIITAP33076 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CIITAP33076 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CIITAP33076 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CIITAP33076 AC099791.2-201ENST00000605725 427 ntBASIC25.5■■□□□ 1.67
CIITAP33076 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
CIITAP33076 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CIITAP33076 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CIITAP33076 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CIITAP33076 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CIITAP33076 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.49■■□□□ 1.67
CIITAP33076 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CIITAP33076 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CIITAP33076 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
CIITAP33076 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
CIITAP33076 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 FP325331.1-202ENST00000623531 1380 ntBASIC25.48■■□□□ 1.67
CIITAP33076 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC25.48■■□□□ 1.67
CIITAP33076 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.48■■□□□ 1.67
CIITAP33076 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC25.48■■□□□ 1.67
CIITAP33076 AC092171.4-201ENST00000609130 632 ntBASIC25.48■■□□□ 1.67
CIITAP33076 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.48■■□□□ 1.67
CIITAP33076 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
CIITAP33076 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC25.48■■□□□ 1.67
CIITAP33076 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CIITAP33076 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CIITAP33076 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CIITAP33076 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CIITAP33076 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CIITAP33076 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CIITAP33076 AC110285.6-201ENST00000617652 491 ntBASIC25.47■■□□□ 1.67
CIITAP33076 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.47■■□□□ 1.67
CIITAP33076 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.47■■□□□ 1.67
CIITAP33076 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CIITAP33076 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.47■■□□□ 1.67
CIITAP33076 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms