Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A1P20908 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
COL5A1P20908 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.96■■□□□ 1.11
COL5A1P20908 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.96■■□□□ 1.11
COL5A1P20908 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.96■■□□□ 1.11
COL5A1P20908 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.96■■□□□ 1.11
COL5A1P20908 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A1P20908 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A1P20908 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A1P20908 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A1P20908 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A1P20908 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
COL5A1P20908 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A1P20908 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A1P20908 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
COL5A1P20908 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A1P20908 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.94■■□□□ 1.1
COL5A1P20908 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.94■■□□□ 1.1
COL5A1P20908 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A1P20908 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A1P20908 MIR572-201ENST00000384983 95 ntBASIC21.94■■□□□ 1.1
COL5A1P20908 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
COL5A1P20908 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
COL5A1P20908 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A1P20908 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
COL5A1P20908 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.93■■□□□ 1.1
COL5A1P20908 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A1P20908 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.93■■□□□ 1.1
COL5A1P20908 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.93■■□□□ 1.1
COL5A1P20908 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
COL5A1P20908 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.92■■□□□ 1.1
COL5A1P20908 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.92■■□□□ 1.1
COL5A1P20908 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
COL5A1P20908 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
COL5A1P20908 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
COL5A1P20908 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.92■■□□□ 1.1
COL5A1P20908 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.92■■□□□ 1.1
COL5A1P20908 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.92■■□□□ 1.1
COL5A1P20908 AL354811.1-201ENST00000610286 706 ntBASIC21.92■■□□□ 1.1
COL5A1P20908 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.92■■□□□ 1.1
COL5A1P20908 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.92■■□□□ 1.1
COL5A1P20908 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
COL5A1P20908 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.91■■□□□ 1.1
COL5A1P20908 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A1P20908 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
COL5A1P20908 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.91■■□□□ 1.1
COL5A1P20908 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
COL5A1P20908 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.91■■□□□ 1.1
COL5A1P20908 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A1P20908 pRNA.6-201ENST00000610482 90 ntBASIC21.91■■□□□ 1.1
COL5A1P20908 pRNA.5-201ENST00000612139 90 ntBASIC21.91■■□□□ 1.1
COL5A1P20908 pRNA.11-201ENST00000618423 90 ntBASIC21.91■■□□□ 1.1
COL5A1P20908 pRNA.13-201ENST00000619112 90 ntBASIC21.91■■□□□ 1.1
COL5A1P20908 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
COL5A1P20908 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
COL5A1P20908 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
COL5A1P20908 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A1P20908 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A1P20908 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
COL5A1P20908 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.9■■□□□ 1.1
COL5A1P20908 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A1P20908 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A1P20908 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A1P20908 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.9■■□□□ 1.1
COL5A1P20908 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A1P20908 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
COL5A1P20908 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC21.89■■□□□ 1.1
COL5A1P20908 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
COL5A1P20908 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.89■■□□□ 1.1
COL5A1P20908 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
COL5A1P20908 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.89■■□□□ 1.09
COL5A1P20908 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.89■■□□□ 1.09
COL5A1P20908 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC21.89■■□□□ 1.09
COL5A1P20908 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A1P20908 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A1P20908 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A1P20908 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.88■■□□□ 1.09
COL5A1P20908 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A1P20908 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.88■■□□□ 1.09
COL5A1P20908 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A1P20908 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.88■■□□□ 1.09
COL5A1P20908 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.88■■□□□ 1.09
COL5A1P20908 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL5A1P20908 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
COL5A1P20908 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms