Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 pRNA.5-201ENST00000612139 90 ntBASIC26.77■■□□□ 1.88
COL2A1P02458 pRNA.11-201ENST00000618423 90 ntBASIC26.77■■□□□ 1.88
COL2A1P02458 pRNA.13-201ENST00000619112 90 ntBASIC26.77■■□□□ 1.88
COL2A1P02458 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.88
COL2A1P02458 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
COL2A1P02458 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL2A1P02458 RHOF-204ENST00000537265 699 ntTSL 2 BASIC26.76■■□□□ 1.87
COL2A1P02458 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC26.76■■□□□ 1.87
COL2A1P02458 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC26.76■■□□□ 1.87
COL2A1P02458 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
COL2A1P02458 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
COL2A1P02458 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
COL2A1P02458 ASB1-202ENST00000409297 878 ntTSL 5 BASIC26.75■■□□□ 1.87
COL2A1P02458 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL2A1P02458 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
COL2A1P02458 IRS3P-201ENST00000223076 1006 ntBASIC26.74■■□□□ 1.87
COL2A1P02458 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC26.74■■□□□ 1.87
COL2A1P02458 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.74■■□□□ 1.87
COL2A1P02458 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
COL2A1P02458 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL2A1P02458 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
COL2A1P02458 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.74■■□□□ 1.87
COL2A1P02458 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.74■■□□□ 1.87
COL2A1P02458 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC26.73■■□□□ 1.87
COL2A1P02458 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.73■■□□□ 1.87
COL2A1P02458 SLC47A1P1-202ENST00000449666 945 ntBASIC26.73■■□□□ 1.87
COL2A1P02458 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.73■■□□□ 1.87
COL2A1P02458 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
COL2A1P02458 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
COL2A1P02458 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC26.72■■□□□ 1.87
COL2A1P02458 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC26.72■■□□□ 1.87
COL2A1P02458 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.72■■□□□ 1.87
COL2A1P02458 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL2A1P02458 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
COL2A1P02458 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
COL2A1P02458 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
COL2A1P02458 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC26.71■■□□□ 1.87
COL2A1P02458 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC26.71■■□□□ 1.87
COL2A1P02458 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
COL2A1P02458 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
COL2A1P02458 PLD4-205ENST00000553861 667 ntTSL 2 BASIC26.7■■□□□ 1.87
COL2A1P02458 AC104564.3-201ENST00000582367 638 ntBASIC26.7■■□□□ 1.87
COL2A1P02458 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
COL2A1P02458 AL499627.2-201ENST00000606283 725 ntBASIC26.7■■□□□ 1.87
COL2A1P02458 EED-207ENST00000528180 1745 ntTSL 5 BASIC26.7■■□□□ 1.86
COL2A1P02458 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
COL2A1P02458 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.86
COL2A1P02458 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
COL2A1P02458 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.86
COL2A1P02458 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC26.69■■□□□ 1.86
COL2A1P02458 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.69■■□□□ 1.86
COL2A1P02458 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
COL2A1P02458 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL2A1P02458 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
COL2A1P02458 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.69■■□□□ 1.86
COL2A1P02458 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
COL2A1P02458 AC138932.3-201ENST00000567634 1902 ntBASIC26.69■■□□□ 1.86
COL2A1P02458 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC26.69■■□□□ 1.86
COL2A1P02458 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC26.68■■□□□ 1.86
COL2A1P02458 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL2A1P02458 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
COL2A1P02458 ANKRD20A6P-201ENST00000618763 204 ntBASIC26.68■■□□□ 1.86
COL2A1P02458 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC26.68■■□□□ 1.86
COL2A1P02458 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC26.68■■□□□ 1.86
COL2A1P02458 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.67■■□□□ 1.86
COL2A1P02458 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.67■■□□□ 1.86
COL2A1P02458 MED17-227ENST00000640521 2047 ntTSL 5 BASIC26.67■■□□□ 1.86
COL2A1P02458 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL2A1P02458 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL2A1P02458 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
COL2A1P02458 JTB-203ENST00000368589 1216 ntTSL 2 BASIC26.67■■□□□ 1.86
COL2A1P02458 AC087623.3-201ENST00000607047 1098 ntBASIC26.67■■□□□ 1.86
COL2A1P02458 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL2A1P02458 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
COL2A1P02458 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
COL2A1P02458 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26.66■■□□□ 1.86
COL2A1P02458 GRAMD4P2-201ENST00000423297 1097 ntBASIC26.66■■□□□ 1.86
COL2A1P02458 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL2A1P02458 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL2A1P02458 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC26.65■■□□□ 1.86
COL2A1P02458 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL2A1P02458 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
COL2A1P02458 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.65■■□□□ 1.86
COL2A1P02458 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL2A1P02458 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL2A1P02458 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
COL2A1P02458 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.64■■□□□ 1.86
COL2A1P02458 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC26.64■■□□□ 1.86
COL2A1P02458 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
COL2A1P02458 AICDA-202ENST00000537228 667 ntTSL 5 BASIC26.64■■□□□ 1.86
COL2A1P02458 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
COL2A1P02458 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
COL2A1P02458 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC26.64■■□□□ 1.85
COL2A1P02458 FP325331.1-202ENST00000623531 1380 ntBASIC26.64■■□□□ 1.85
COL2A1P02458 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
COL2A1P02458 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC26.63■■□□□ 1.85
COL2A1P02458 OR2I1P-207ENST00000453522 948 ntBASIC26.63■■□□□ 1.85
COL2A1P02458 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC26.63■■□□□ 1.85
COL2A1P02458 DUX4L4-201ENST00000566884 1269 ntBASIC26.63■■□□□ 1.85
COL2A1P02458 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC26.63■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms