Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 RHOQP1-201ENST00000555758 579 ntBASIC14.43□□□□□ -0.1
DKK3Q9UBP4 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 KRT8P1-201ENST00000557533 1207 ntBASIC14.43□□□□□ -0.1
DKK3Q9UBP4 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 FAM90A2P-201ENST00000511144 1395 ntBASIC14.43□□□□□ -0.1
DKK3Q9UBP4 FAM90A25P-201ENST00000528404 1395 ntBASIC14.43□□□□□ -0.1
DKK3Q9UBP4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
DKK3Q9UBP4 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 RPSAP15-201ENST00000448168 861 ntBASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AC234782.1-201ENST00000451950 919 ntBASIC14.42□□□□□ -0.1
DKK3Q9UBP4 RN7SL277P-201ENST00000481521 288 ntBASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AC134698.3-201ENST00000523880 214 ntBASIC14.42□□□□□ -0.1
DKK3Q9UBP4 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 ARL16-210ENST00000574938 751 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AL109837.1-201ENST00000603272 613 ntBASIC14.42□□□□□ -0.1
DKK3Q9UBP4 AC012044.1-201ENST00000603431 297 ntBASIC14.42□□□□□ -0.1
DKK3Q9UBP4 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
DKK3Q9UBP4 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 AC067750.1-201ENST00000608826 6545 ntBASIC14.41□□□□□ -0.1
DKK3Q9UBP4 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 TBC1D3J-201ENST00000620719 1426 ntBASIC14.41□□□□□ -0.1
DKK3Q9UBP4 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 RPS9P1-201ENST00000419943 583 ntBASIC14.41□□□□□ -0.1
DKK3Q9UBP4 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC14.41□□□□□ -0.1
DKK3Q9UBP4 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms