Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 AC027237.1-201ENST00000560942 655 ntBASIC16.33■□□□□ 0.2
ERCC4Q92889 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.33■□□□□ 0.2
ERCC4Q92889 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 AC073413.1-201ENST00000603927 732 ntBASIC16.33■□□□□ 0.2
ERCC4Q92889 AL358472.3-201ENST00000608147 415 ntBASIC16.33■□□□□ 0.2
ERCC4Q92889 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.33■□□□□ 0.2
ERCC4Q92889 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC16.33■□□□□ 0.2
ERCC4Q92889 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC16.33■□□□□ 0.2
ERCC4Q92889 AGBL2-205ENST00000528244 2929 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
ERCC4Q92889 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC16.33■□□□□ 0.2
ERCC4Q92889 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
ERCC4Q92889 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
ERCC4Q92889 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC4Q92889 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ERCC4Q92889 MAPK4-206ENST00000592595 4330 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 AL035633.1-201ENST00000406139 838 ntBASIC16.32■□□□□ 0.2
ERCC4Q92889 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
ERCC4Q92889 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC4Q92889 FAM8A4P-201ENST00000435433 1213 ntBASIC16.32■□□□□ 0.2
ERCC4Q92889 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC4Q92889 NCLP1-201ENST00000445357 1963 ntBASIC16.32■□□□□ 0.2
ERCC4Q92889 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC16.32■□□□□ 0.2
ERCC4Q92889 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC4Q92889 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC4Q92889 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.32■□□□□ 0.2
ERCC4Q92889 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC16.32■□□□□ 0.2
ERCC4Q92889 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ERCC4Q92889 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 TAPBP-234ENST00000434618 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC4Q92889 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC16.32■□□□□ 0.2
ERCC4Q92889 AC083964.2-201ENST00000623988 2396 ntBASIC16.31■□□□□ 0.2
ERCC4Q92889 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
ERCC4Q92889 AP1B1-201ENST00000317368 3903 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 USP3-204ENST00000540797 5474 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ERCC4Q92889 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.31■□□□□ 0.2
ERCC4Q92889 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 HARS-202ENST00000415192 1401 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC16.31■□□□□ 0.2
ERCC4Q92889 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ERCC4Q92889 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ERCC4Q92889 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 COX20P2-201ENST00000452636 358 ntBASIC16.31■□□□□ 0.2
ERCC4Q92889 FTH1P14-201ENST00000482930 551 ntBASIC16.31■□□□□ 0.2
ERCC4Q92889 USP32P1-208ENST00000506594 1164 ntBASIC16.31■□□□□ 0.2
ERCC4Q92889 SLC25A47P1-201ENST00000531577 414 ntBASIC16.31■□□□□ 0.2
ERCC4Q92889 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 AC078819.1-201ENST00000547454 765 ntBASIC16.31■□□□□ 0.2
ERCC4Q92889 AC012085.1-201ENST00000548270 765 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms