Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CRCP-204ENST00000398684 492 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 ZFAT-207ENST00000520214 4294 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PLOD2-201ENST00000282903 3732 ntAPPRIS P4 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 HLA-J-204ENST00000495278 958 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AC010336.1-201ENST00000539278 4739 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 PTGR2-205ENST00000555661 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 AL138725.1-201ENST00000407347 1314 ntBASIC4.49□□□□□ -1.69
SYNE1Q8NF91 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC4.49□□□□□ -1.69
SYNE1Q8NF91 LINC01165-201ENST00000445190 1623 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 OR2K2-202ENST00000374428 1038 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AL157407.1-201ENST00000435784 904 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC012618.1-201ENST00000461223 412 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC009084.3-201ENST00000623356 437 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC015909.3-201ENST00000572855 1794 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 STRN-202ENST00000379213 2254 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC023908.3-201ENST00000564211 3047 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PPP1R26P3-201ENST00000612861 3800 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FAM200B-223ENST00000622362 4377 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ZSCAN30-202ENST00000420878 4323 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 FANCC-202ENST00000375305 4504 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 RN7SL396P-201ENST00000471086 295 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC026803.1-201ENST00000569130 274 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC132192.2-201ENST00000596206 1147 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 VAMP1-201ENST00000361716 3449 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 ABCD1-201ENST00000218104 3664 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 CXorf38-203ENST00000378426 4895 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 AC112693.3-201ENST00000624819 1983 ntBASIC4.48□□□□□ -1.69
SYNE1Q8NF91 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SYNE1Q8NF91 C18orf15-201ENST00000623680 2534 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms