Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.89□□□□□ -0.19
FOXA1P55317 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 AC026954.1-201ENST00000429771 1293 ntBASIC13.89□□□□□ -0.19
FOXA1P55317 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 HOMER2P2-201ENST00000451621 847 ntBASIC13.89□□□□□ -0.19
FOXA1P55317 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.89□□□□□ -0.19
FOXA1P55317 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 AP000812.2-201ENST00000538934 718 ntBASIC13.89□□□□□ -0.19
FOXA1P55317 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC13.89□□□□□ -0.19
FOXA1P55317 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.89□□□□□ -0.19
FOXA1P55317 PAM16-211ENST00000575848 518 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 AC021016.3-201ENST00000608367 477 ntBASIC13.89□□□□□ -0.19
FOXA1P55317 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC13.89□□□□□ -0.19
FOXA1P55317 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
FOXA1P55317 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
FOXA1P55317 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.89□□□□□ -0.19
FOXA1P55317 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
FOXA1P55317 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 AL359183.1-201ENST00000623796 2132 ntBASIC13.88□□□□□ -0.19
FOXA1P55317 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 PCDHA6-201ENST00000378126 3267 ntBASIC13.88□□□□□ -0.19
FOXA1P55317 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 AK2P2-201ENST00000439142 405 ntBASIC13.88□□□□□ -0.19
FOXA1P55317 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.88□□□□□ -0.19
FOXA1P55317 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.88□□□□□ -0.19
FOXA1P55317 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.88□□□□□ -0.19
FOXA1P55317 ABR-205ENST00000544583 5595 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
FOXA1P55317 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
FOXA1P55317 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 AC004623.1-201ENST00000624592 2127 ntBASIC13.88□□□□□ -0.19
FOXA1P55317 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 AC083964.2-201ENST00000623988 2396 ntBASIC13.88□□□□□ -0.19
FOXA1P55317 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
FOXA1P55317 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
FOXA1P55317 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
FOXA1P55317 CYP4F23P-201ENST00000593402 1579 ntBASIC13.88□□□□□ -0.19
FOXA1P55317 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
FOXA1P55317 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
FOXA1P55317 AL023775.1-201ENST00000454907 1746 ntBASIC13.87□□□□□ -0.19
FOXA1P55317 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
FOXA1P55317 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms