Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
BRCA1P38398 RCC2P5-201ENST00000492126 1487 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
BRCA1P38398 ATF4P4-201ENST00000393544 1930 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
BRCA1P38398 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 AC138392.1-201ENST00000427577 921 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCA1P38398 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC16.67■□□□□ 0.26
BRCA1P38398 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCA1P38398 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC16.67■□□□□ 0.26
BRCA1P38398 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC16.67■□□□□ 0.26
BRCA1P38398 AP000553.2-201ENST00000609038 441 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 AC099552.4-201ENST00000624248 949 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.67■□□□□ 0.26
BRCA1P38398 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
BRCA1P38398 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
BRCA1P38398 AC034205.3-201ENST00000603595 1376 ntBASIC16.67■□□□□ 0.26
BRCA1P38398 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BRCA1P38398 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.66■□□□□ 0.26
BRCA1P38398 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 AC093462.1-201ENST00000621167 1683 ntBASIC16.66■□□□□ 0.26
BRCA1P38398 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 TPM3P7-201ENST00000338274 732 ntBASIC16.66■□□□□ 0.26
BRCA1P38398 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
BRCA1P38398 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
BRCA1P38398 MKL1-204ENST00000402630 747 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 AL627095.1-201ENST00000414775 321 ntBASIC16.66■□□□□ 0.26
BRCA1P38398 AC108879.1-201ENST00000438026 828 ntTSL 3 BASIC16.66■□□□□ 0.26
BRCA1P38398 AL583804.1-201ENST00000448643 810 ntTSL 3 BASIC16.66■□□□□ 0.26
BRCA1P38398 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC16.66■□□□□ 0.26
BRCA1P38398 AC005920.4-201ENST00000573301 492 ntTSL 4 BASIC16.66■□□□□ 0.26
BRCA1P38398 MIR4309-201ENST00000582498 83 ntBASIC16.66■□□□□ 0.26
BRCA1P38398 MIR5193-201ENST00000584510 109 ntBASIC16.66■□□□□ 0.26
BRCA1P38398 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BRCA1P38398 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.66■□□□□ 0.26
BRCA1P38398 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC16.66■□□□□ 0.26
BRCA1P38398 KRT8P24-201ENST00000560290 1559 ntBASIC16.66■□□□□ 0.26
BRCA1P38398 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC16.66■□□□□ 0.26
BRCA1P38398 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC16.66■□□□□ 0.26
BRCA1P38398 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
BRCA1P38398 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.65■□□□□ 0.26
BRCA1P38398 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 UBIAD1-201ENST00000376804 825 ntTSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
BRCA1P38398 AK2-208ENST00000487289 920 ntTSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 BBOX1-AS1-203ENST00000530430 879 ntTSL 4 BASIC16.65■□□□□ 0.26
BRCA1P38398 BBOX1-AS1-204ENST00000531363 745 ntTSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC16.65■□□□□ 0.26
BRCA1P38398 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC16.65■□□□□ 0.26
BRCA1P38398 GOLGA2P10-201ENST00000550961 817 ntBASIC16.65■□□□□ 0.26
BRCA1P38398 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC16.65■□□□□ 0.26
BRCA1P38398 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC16.65■□□□□ 0.26
BRCA1P38398 NAA38-204ENST00000575208 529 ntTSL 3 BASIC16.65■□□□□ 0.26
BRCA1P38398 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC16.65■□□□□ 0.26
BRCA1P38398 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.65■□□□□ 0.26
BRCA1P38398 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
BRCA1P38398 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
BRCA1P38398 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.65■□□□□ 0.26
BRCA1P38398 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.65■□□□□ 0.26
BRCA1P38398 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BRCA1P38398 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC16.65■□□□□ 0.26
BRCA1P38398 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms