Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RN7SKP212-201ENST00000410851 328 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 CDKN2A-AS1-201ENST00000441769 823 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A3P25940 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A3P25940 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC17.31■□□□□ 0.36
COL5A3P25940 CXXC1P1-202ENST00000489409 1212 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 SAA2-206ENST00000530400 323 ntTSL 3 BASIC17.31■□□□□ 0.36
COL5A3P25940 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC17.31■□□□□ 0.36
COL5A3P25940 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A3P25940 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC17.31■□□□□ 0.36
COL5A3P25940 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A3P25940 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC17.31■□□□□ 0.36
COL5A3P25940 GOLGA8IP-202ENST00000611635 2100 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC17.31■□□□□ 0.36
COL5A3P25940 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC17.31■□□□□ 0.36
COL5A3P25940 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL5A3P25940 AC034205.3-201ENST00000603595 1376 ntBASIC17.31■□□□□ 0.36
COL5A3P25940 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL5A3P25940 RAPGEFL1-202ENST00000456989 1582 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL5A3P25940 AP000437.1-201ENST00000624057 2085 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 AL121994.1-201ENST00000413189 402 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 SNRPCP15-201ENST00000424055 192 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 AC113398.1-201ENST00000464124 406 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC17.3■□□□□ 0.36
COL5A3P25940 RN7SL162P-201ENST00000579233 292 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 RN7SL480P-201ENST00000581481 294 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC17.3■□□□□ 0.36
COL5A3P25940 AC087072.1-201ENST00000603727 421 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC17.3■□□□□ 0.36
COL5A3P25940 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.3■□□□□ 0.36
COL5A3P25940 DDC-213ENST00000617822 1809 ntTSL 3 BASIC17.3■□□□□ 0.36
COL5A3P25940 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC17.3■□□□□ 0.36
COL5A3P25940 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
COL5A3P25940 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 SLC35F2-201ENST00000375682 1076 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL5A3P25940 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
COL5A3P25940 SNORA50C-201ENST00000408535 133 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 SNORD23-201ENST00000408876 110 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 FAM197Y6-201ENST00000420524 766 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 AC091132.6-201ENST00000586411 826 ntTSL 5 BASIC17.3■□□□□ 0.36
COL5A3P25940 IFNL3P1-201ENST00000595082 501 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 SNORA50.1-201ENST00000628590 135 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 AC005865.2-202ENST00000635814 725 ntBASIC17.3■□□□□ 0.36
COL5A3P25940 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A3P25940 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A3P25940 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC17.29■□□□□ 0.36
COL5A3P25940 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL5A3P25940 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 HLF-202ENST00000430986 1385 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A3P25940 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 AC140479.7-201ENST00000636301 2332 ntBASIC17.29■□□□□ 0.36
COL5A3P25940 AC144831.1-201ENST00000573312 2656 ntBASIC17.29■□□□□ 0.36
COL5A3P25940 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
COL5A3P25940 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.29■□□□□ 0.36
COL5A3P25940 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC17.29■□□□□ 0.36
COL5A3P25940 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC17.29■□□□□ 0.36
COL5A3P25940 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
COL5A3P25940 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 POP5-201ENST00000341039 913 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A3P25940 TPT1P9-201ENST00000413759 514 ntBASIC17.29■□□□□ 0.36
COL5A3P25940 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC17.29■□□□□ 0.36
COL5A3P25940 YBX1P3-201ENST00000468366 909 ntBASIC17.29■□□□□ 0.36
COL5A3P25940 ISL1-203ENST00000511384 981 ntTSL 5 BASIC17.29■□□□□ 0.36
COL5A3P25940 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC17.29■□□□□ 0.36
COL5A3P25940 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC17.29■□□□□ 0.36
COL5A3P25940 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A3P25940 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 BX322562.1-201ENST00000617004 561 ntBASIC17.29■□□□□ 0.36
COL5A3P25940 AC138627.1-201ENST00000641127 1257 ntBASIC17.29■□□□□ 0.36
COL5A3P25940 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 RIBC1-202ENST00000375327 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A3P25940 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
COL5A3P25940 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
COL5A3P25940 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms