Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AL365181.3-201ENST00000605886 3222 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 TNN-202ENST00000621086 4234 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 MSTO2P-201ENST00000314835 1709 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AC005229.1-201ENST00000392885 409 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 BRWD1P1-201ENST00000401091 371 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 SOCS2P1-201ENST00000417727 557 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 RPL7P3-201ENST00000441388 714 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AL355994.2-201ENST00000447882 704 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 GAPDHP40-201ENST00000505218 1006 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AL049840.4-201ENST00000602422 811 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 MIR6787-201ENST00000616675 61 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 AL157996.1-201ENST00000624684 2299 ntBASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
TRIM55Q9BYV6 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 AL133338.1-201ENST00000565695 1517 ntBASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 REC8-213ENST00000620473 2405 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 MBP-205ENST00000397860 4844 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 VDAC1P7-201ENST00000462417 847 ntBASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 ENPP7P5-201ENST00000541031 1031 ntBASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 AC120045.2-201ENST00000567334 178 ntBASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 CLUHP6-201ENST00000580789 941 ntBASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 LRRC32-201ENST00000260061 4207 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 CHMP7-202ENST00000397677 3403 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 TUBB1P2-201ENST00000422712 1306 ntBASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 TUBB1P1-201ENST00000503144 1300 ntBASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
TRIM55Q9BYV6 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms