Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
ATG4AQ8WYN0 INVS-201ENST00000262456 2968 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 FES-201ENST00000328850 2829 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 TMEM201-201ENST00000340305 3851 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SEC14L3-204ENST00000403066 2474 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
ATG4AQ8WYN0 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 SYCP2L-201ENST00000283141 3130 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 USP39-207ENST00000450066 2086 ntTSL 2 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AL355994.2-201ENST00000447882 704 ntBASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AP005018.1-201ENST00000525475 301 ntBASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AP006547.1-201ENST00000563435 692 ntBASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AC132192.2-201ENST00000596206 1147 ntBASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 REXO1L6P-201ENST00000603433 1515 ntBASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
ATG4AQ8WYN0 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms