Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ATP5G2P4-201ENST00000442175 420 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AC005096.1-201ENST00000560499 622 ntTSL 3 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 RAB43P1-201ENST00000561790 589 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AC106886.1-201ENST00000568660 600 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 BRI3BPP1-201ENST00000594224 787 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 LRRIQ3-203ENST00000370911 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 INTS4P2-202ENST00000614726 2019 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 CYP4F11-204ENST00000591841 2531 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AC011700.1-201ENST00000610409 2627 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 AC114271.1-201ENST00000612689 2813 ntBASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 LINC01725-203ENST00000417975 3177 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
DEPDC4Q8N2C3 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 DDC-207ENST00000444124 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC011498.7-201ENST00000624986 2027 ntBASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC068760.1-201ENST00000493579 1953 ntBASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SALL4P5-201ENST00000419001 1760 ntBASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SCAF4-202ENST00000399804 4127 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 C1QBPP1-201ENST00000400117 770 ntBASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC004672.2-201ENST00000537181 574 ntTSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 ZNF714-203ENST00000596053 800 ntTSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC010319.3-201ENST00000597028 470 ntBASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 AC145098.2-201ENST00000623593 3026 ntBASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 MON1B-201ENST00000248248 6091 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
DEPDC4Q8N2C3 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC13.5□□□□□ -0.25
DEPDC4Q8N2C3 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms