Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GOLGA8VP-201ENST00000559009 1798 ntBASIC13.6□□□□□ -0.23
SOX3P41225 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC13.6□□□□□ -0.23
SOX3P41225 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
SOX3P41225 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
SOX3P41225 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 LDB3-209ENST00000623056 2314 ntTSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
SOX3P41225 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.59□□□□□ -0.23
SOX3P41225 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 TUBB8P8-201ENST00000458717 1058 ntBASIC13.59□□□□□ -0.23
SOX3P41225 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 AC091804.1-201ENST00000486888 567 ntBASIC13.59□□□□□ -0.23
SOX3P41225 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC13.59□□□□□ -0.23
SOX3P41225 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.59□□□□□ -0.23
SOX3P41225 AC044849.1-201ENST00000519737 1188 ntBASIC13.59□□□□□ -0.23
SOX3P41225 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.59□□□□□ -0.23
SOX3P41225 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.59□□□□□ -0.23
SOX3P41225 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.59□□□□□ -0.23
SOX3P41225 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 AL451050.2-201ENST00000606967 682 ntBASIC13.59□□□□□ -0.23
SOX3P41225 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC13.59□□□□□ -0.23
SOX3P41225 AC027601.3-201ENST00000622907 509 ntBASIC13.59□□□□□ -0.23
SOX3P41225 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 AL354702.1-201ENST00000442006 1960 ntBASIC13.59□□□□□ -0.23
SOX3P41225 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
SOX3P41225 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 AC244394.1-201ENST00000435000 1665 ntBASIC13.59□□□□□ -0.23
SOX3P41225 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC13.59□□□□□ -0.23
SOX3P41225 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
SOX3P41225 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SOX3P41225 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC13.58□□□□□ -0.23
SOX3P41225 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.23
SOX3P41225 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
SOX3P41225 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 CDIP1-205ENST00000563332 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
SOX3P41225 NKAIN1P1-201ENST00000435754 582 ntBASIC13.58□□□□□ -0.24
SOX3P41225 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 KLF2P1-201ENST00000447438 1042 ntBASIC13.58□□□□□ -0.24
SOX3P41225 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC13.58□□□□□ -0.24
SOX3P41225 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13.58□□□□□ -0.24
SOX3P41225 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.58□□□□□ -0.24
SOX3P41225 ARTN-209ENST00000479128 471 ntTSL 3 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms