Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 KRT8P4-201ENST00000509735 1454 ntBASIC14.23□□□□□ -0.13
COL6A2P12110 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A2P12110 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A2P12110 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A2P12110 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A2P12110 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A2P12110 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A2P12110 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL6A2P12110 NME1-209ENST00000511355 1645 ntTSL 5 BASIC14.23□□□□□ -0.13
COL6A2P12110 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A2P12110 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
COL6A2P12110 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A2P12110 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A2P12110 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 AC114271.1-201ENST00000612689 2813 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.22□□□□□ -0.13
COL6A2P12110 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A2P12110 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A2P12110 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.22□□□□□ -0.13
COL6A2P12110 AL645933.1-201ENST00000440087 609 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC14.22□□□□□ -0.13
COL6A2P12110 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 RPL8-205ENST00000527914 551 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A2P12110 KRT90P-201ENST00000549264 1064 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 AL512310.5-201ENST00000551999 515 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A2P12110 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.22□□□□□ -0.13
COL6A2P12110 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.22□□□□□ -0.13
COL6A2P12110 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 AC027307.3-201ENST00000594262 1100 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 BTNL10-201ENST00000595971 695 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 AC007952.5-201ENST00000572818 1486 ntBASIC14.22□□□□□ -0.13
COL6A2P12110 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
COL6A2P12110 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL6A2P12110 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 FAS-202ENST00000352159 1722 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A2P12110 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A2P12110 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A2P12110 AL008718.2-201ENST00000609206 1313 ntBASIC14.21□□□□□ -0.13
COL6A2P12110 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.21□□□□□ -0.13
COL6A2P12110 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A2P12110 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.21□□□□□ -0.13
COL6A2P12110 AC007551.1-201ENST00000457394 519 ntBASIC14.21□□□□□ -0.13
COL6A2P12110 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.21□□□□□ -0.13
COL6A2P12110 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
COL6A2P12110 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.21□□□□□ -0.13
COL6A2P12110 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
COL6A2P12110 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.21□□□□□ -0.13
COL6A2P12110 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.21□□□□□ -0.13
COL6A2P12110 PPY2P-201ENST00000582808 702 ntBASIC14.21□□□□□ -0.13
COL6A2P12110 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A2P12110 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.21□□□□□ -0.13
COL6A2P12110 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC14.21□□□□□ -0.13
COL6A2P12110 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL6A2P12110 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms