Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 IGLV3-15-201ENST00000518356 244 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 RHOQP1-201ENST00000555758 579 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 NDUFB10P1-201ENST00000567319 521 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AC106872.11-201ENST00000605838 421 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AC015967.2-201ENST00000624092 234 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AC006435.4-201ENST00000625037 234 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AL356737.1-201ENST00000634391 234 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 MARK2P16-201ENST00000605714 1723 ntBASIC14.37□□□□□ -0.11
LHX3Q9UBR4 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
LHX3Q9UBR4 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 GOLGA8EP-201ENST00000530246 1959 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC068418.2-201ENST00000577309 3703 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 DUT-208ENST00000559540 1441 ntTSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC006987.1-201ENST00000413610 527 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 BX679664.3-201ENST00000414070 555 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AL807761.2-201ENST00000422849 729 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC113935.1-201ENST00000471722 555 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 SIGLEC18P-201ENST00000602271 909 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC007326.1-201ENST00000604539 458 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC068760.1-201ENST00000493579 1953 ntBASIC14.36□□□□□ -0.11
LHX3Q9UBR4 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 CDC42SE2-202ENST00000395246 3485 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LHX3Q9UBR4 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms