Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.33□□□□□ -0.28
RNF4P78317 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RNF4P78317 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 CCT8L1P-201ENST00000465400 1674 ntBASIC13.32□□□□□ -0.28
RNF4P78317 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RNF4P78317 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC13.32□□□□□ -0.28
RNF4P78317 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC13.32□□□□□ -0.28
RNF4P78317 PFN2-206ENST00000461930 606 ntTSL 4 BASIC13.32□□□□□ -0.28
RNF4P78317 TPI1-206ENST00000488464 791 ntTSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 RHEB-207ENST00000496004 744 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC13.32□□□□□ -0.28
RNF4P78317 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC13.32□□□□□ -0.28
RNF4P78317 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RNF4P78317 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC13.32□□□□□ -0.28
RNF4P78317 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RNF4P78317 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
RNF4P78317 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RNF4P78317 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 AC020910.6-201ENST00000623084 1459 ntBASIC13.31□□□□□ -0.28
RNF4P78317 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 AL022313.4-201ENST00000562756 2046 ntBASIC13.31□□□□□ -0.28
RNF4P78317 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC13.31□□□□□ -0.28
RNF4P78317 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 SERPINA7P1-201ENST00000443077 631 ntBASIC13.31□□□□□ -0.28
RNF4P78317 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
RNF4P78317 AL353637.1-201ENST00000451571 732 ntBASIC13.31□□□□□ -0.28
RNF4P78317 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC13.31□□□□□ -0.28
RNF4P78317 RN7SL530P-201ENST00000485097 298 ntBASIC13.31□□□□□ -0.28
RNF4P78317 NUP210P1-202ENST00000504322 710 ntBASIC13.31□□□□□ -0.28
RNF4P78317 AC245884.6-201ENST00000515672 1067 ntBASIC13.31□□□□□ -0.28
RNF4P78317 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC13.31□□□□□ -0.28
RNF4P78317 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC13.31□□□□□ -0.28
RNF4P78317 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.31□□□□□ -0.28
RNF4P78317 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.31□□□□□ -0.28
RNF4P78317 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.31□□□□□ -0.28
RNF4P78317 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.31□□□□□ -0.28
RNF4P78317 IRF3-215ENST00000596822 823 ntTSL 3 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms