Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC098934.1-203ENST00000442868 1262 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 POLR2LP1-206ENST00000444785 187 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 TMA16-204ENST00000508268 608 ntTSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 ETFRF1-207ENST00000556351 838 ntAPPRIS ALT1 TSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC021321.1-201ENST00000607397 1113 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 KCNQ1OT1_1.1-201ENST00000622358 464 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC079331.1-201ENST00000623200 1200 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
LRCH3Q96II8 AC013726.1-201ENST00000563747 2285 ntBASIC15.5■□□□□ 0.07
LRCH3Q96II8 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC15.5■□□□□ 0.07
LRCH3Q96II8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 AL359258.3-201ENST00000622910 2331 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 HLA-DMA-202ENST00000395303 1007 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 KRT18P44-201ENST00000416086 1285 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 AL137244.1-201ENST00000422931 865 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 RN7SL578P-201ENST00000477781 283 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 DPY19L2P4-201ENST00000479881 442 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 PFN2-212ENST00000490975 858 ntTSL 4 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC092910.2-201ENST00000491262 348 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC147876.1-201ENST00000504408 322 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 SMIM15-202ENST00000507416 584 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 C11orf45-202ENST00000524878 609 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 HNRNPA1P5-201ENST00000558213 966 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 MKRN3-202ENST00000564592 629 ntTSL 3 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 KLK13-207ENST00000596955 737 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC105148.1-201ENST00000604961 409 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC137936.2-202ENST00000638124 1146 ntTSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
LRCH3Q96II8 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 ZBED1P1-201ENST00000502364 1930 ntBASIC15.49■□□□□ 0.07
LRCH3Q96II8 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
LRCH3Q96II8 TMBIM7P-203ENST00000641617 1718 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AC127383.1-201ENST00000444697 1800 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
LRCH3Q96II8 AC091951.1-201ENST00000512854 2465 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 AP000568.1-201ENST00000282964 442 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
LRCH3Q96II8 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC15.48■□□□□ 0.07
LRCH3Q96II8 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms