Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AGPAT3-203ENST00000398058 4338 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 BHLHB9-203ENST00000447531 4031 ntAPPRIS P1 TSL 4 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 MIR4754-201ENST00000582477 89 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 RN7SL163P-201ENST00000583100 276 ntBASIC4.51□□□□□ -1.69
SYNE1Q8NF91 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
SYNE1Q8NF91 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PTPN1-201ENST00000371621 4008 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 MIR648-201ENST00000385046 94 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 ATP6V0CP2-201ENST00000469409 207 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 INAVA-201ENST00000367342 4298 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 CAP2P1-201ENST00000557743 1390 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 OXR1-202ENST00000312046 4406 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 MX1-218ENST00000619682 1980 ntTSL 5 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 POM121L8P-201ENST00000417732 1281 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 POM121L9P-203ENST00000441984 1285 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 MBP-227ENST00000526111 581 ntTSL 4 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 KRT8P29-201ENST00000420409 1371 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 INTS6L-201ENST00000370752 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PACSIN1-207ENST00000620693 4299 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AP005117.1-202ENST00000581724 1908 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 HAS3-202ENST00000306560 4220 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 DDR1-238ENST00000446312 3202 ntTSL 5 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 ITGA4-203ENST00000397033 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 DKFZP434H168-201ENST00000567381 1905 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 RNMTL1P1-201ENST00000454103 560 ntBASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC4.5□□□□□ -1.69
SYNE1Q8NF91 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms