Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AC012441.2-201ENST00000444843 739 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AC244197.1-201ENST00000456494 951 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 SIGLEC18P-201ENST00000602271 909 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AL139339.2-201ENST00000608063 657 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AL627230.2-201ENST00000613254 655 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A21P-201ENST00000510875 1396 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A15P-201ENST00000514465 1395 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A6P-201ENST00000515148 1394 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A16P-201ENST00000526662 1395 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A9P-201ENST00000527940 1395 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A5P-201ENST00000528738 1395 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A14P-201ENST00000530386 1395 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM90A13P-201ENST00000534703 1395 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AC004554.1-201ENST00000422830 1468 ntBASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC13.9□□□□□ -0.18
COL28A1Q2UY09 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.19
COL28A1Q2UY09 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.19
COL28A1Q2UY09 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.19
COL28A1Q2UY09 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
COL28A1Q2UY09 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC007686.3-201ENST00000619017 3487 ntBASIC13.89□□□□□ -0.19
COL28A1Q2UY09 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 ACE3P-201ENST00000423435 1973 ntBASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 LILRP1-201ENST00000444199 1370 ntBASIC13.89□□□□□ -0.19
COL28A1Q2UY09 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC010327.5-201ENST00000586923 3061 ntBASIC13.89□□□□□ -0.19
COL28A1Q2UY09 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 C11orf49-203ENST00000378618 1166 ntTSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 STK16-203ENST00000409516 895 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 SHBG-210ENST00000572262 984 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC084781.1-201ENST00000613737 656 ntBASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AL451007.2-201ENST00000632004 563 ntBASIC13.89□□□□□ -0.19
COL28A1Q2UY09 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
COL28A1Q2UY09 AC013726.1-201ENST00000563747 2285 ntBASIC13.89□□□□□ -0.19
COL28A1Q2UY09 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms