Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
SOX2P48431 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC12.75□□□□□ -0.37
SOX2P48431 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 ANKRD36-204ENST00000461153 6102 ntAPPRIS P2 TSL 5 BASIC12.75□□□□□ -0.37
SOX2P48431 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC12.75□□□□□ -0.37
SOX2P48431 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC12.75□□□□□ -0.37
SOX2P48431 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 AC004945.1-201ENST00000416738 983 ntBASIC12.75□□□□□ -0.37
SOX2P48431 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC12.75□□□□□ -0.37
SOX2P48431 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.75□□□□□ -0.37
SOX2P48431 URGCP-206ENST00000446958 365 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 MYCLP2-201ENST00000449268 967 ntBASIC12.75□□□□□ -0.37
SOX2P48431 FKBP4P6-201ENST00000457486 1332 ntBASIC12.75□□□□□ -0.37
SOX2P48431 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC12.75□□□□□ -0.37
SOX2P48431 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 ATF5-205ENST00000600336 682 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 GOLGA8IP-202ENST00000611635 2100 ntBASIC12.75□□□□□ -0.37
SOX2P48431 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC12.75□□□□□ -0.37
SOX2P48431 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 NCAPG-201ENST00000251496 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
SOX2P48431 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.75□□□□□ -0.37
SOX2P48431 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC12.74□□□□□ -0.37
SOX2P48431 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC12.74□□□□□ -0.37
SOX2P48431 AL022313.4-201ENST00000562756 2046 ntBASIC12.74□□□□□ -0.37
SOX2P48431 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 ZCCHC8-207ENST00000543897 5663 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 SPG11-202ENST00000427534 6935 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.74□□□□□ -0.37
SOX2P48431 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 AL590440.2-201ENST00000641973 1595 ntBASIC12.74□□□□□ -0.37
SOX2P48431 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC12.74□□□□□ -0.37
SOX2P48431 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC12.74□□□□□ -0.37
SOX2P48431 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 DLGAP1-201ENST00000315677 6683 ntAPPRIS P1 TSL 5 BASIC12.74□□□□□ -0.37
SOX2P48431 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.74□□□□□ -0.37
SOX2P48431 AC245100.3-201ENST00000441281 285 ntBASIC12.74□□□□□ -0.37
SOX2P48431 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.74□□□□□ -0.37
SOX2P48431 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC12.74□□□□□ -0.37
SOX2P48431 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC12.74□□□□□ -0.37
SOX2P48431 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC12.74□□□□□ -0.37
SOX2P48431 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.74□□□□□ -0.37
SOX2P48431 CLUHP6-201ENST00000580789 941 ntBASIC12.74□□□□□ -0.37
SOX2P48431 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.74□□□□□ -0.37
SOX2P48431 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC12.74□□□□□ -0.37
SOX2P48431 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 MYLK-202ENST00000354792 7531 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
SOX2P48431 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SOX2P48431 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC12.74□□□□□ -0.37
SOX2P48431 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC12.74□□□□□ -0.37
SOX2P48431 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC12.74□□□□□ -0.37
SOX2P48431 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.74□□□□□ -0.37
SOX2P48431 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
SOX2P48431 RAB3D-201ENST00000222120 4273 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms