Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A3P25940 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A3P25940 YY1P2-201ENST00000438766 948 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 RNA5SP288-201ENST00000516075 93 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 URB1-AS1-201ENST00000534991 831 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
COL5A3P25940 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC17.4■□□□□ 0.38
COL5A3P25940 RN7SL440P-201ENST00000577855 343 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 RPS5-205ENST00000598495 800 ntTSL 3 BASIC17.4■□□□□ 0.38
COL5A3P25940 AL356740.1-201ENST00000602192 1297 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC17.4■□□□□ 0.38
COL5A3P25940 AC139100.2-201ENST00000616901 662 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 CCDC32-215ENST00000625629 801 ntTSL 5 BASIC17.4■□□□□ 0.38
COL5A3P25940 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
COL5A3P25940 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 CICP16-201ENST00000502609 2813 ntBASIC17.4■□□□□ 0.38
COL5A3P25940 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
COL5A3P25940 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
COL5A3P25940 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
COL5A3P25940 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL5A3P25940 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
COL5A3P25940 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL5A3P25940 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
COL5A3P25940 BX640514.1-201ENST00000583223 1918 ntBASIC17.39■□□□□ 0.38
COL5A3P25940 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A3P25940 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.39■□□□□ 0.37
COL5A3P25940 MED15P3-201ENST00000413613 326 ntBASIC17.39■□□□□ 0.37
COL5A3P25940 RPL14-203ENST00000416518 812 ntTSL 3 BASIC17.39■□□□□ 0.37
COL5A3P25940 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC17.39■□□□□ 0.37
COL5A3P25940 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC17.39■□□□□ 0.37
COL5A3P25940 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC17.39■□□□□ 0.37
COL5A3P25940 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC17.39■□□□□ 0.37
COL5A3P25940 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A3P25940 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
COL5A3P25940 MIR3940-201ENST00000579148 102 ntBASIC17.39■□□□□ 0.37
COL5A3P25940 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC17.39■□□□□ 0.37
COL5A3P25940 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC17.39■□□□□ 0.37
COL5A3P25940 AF013593.1-201ENST00000458074 1487 ntBASIC17.39■□□□□ 0.37
COL5A3P25940 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
COL5A3P25940 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC17.39■□□□□ 0.37
COL5A3P25940 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A3P25940 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.39■□□□□ 0.37
COL5A3P25940 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.39■□□□□ 0.37
COL5A3P25940 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.39■□□□□ 0.37
COL5A3P25940 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
COL5A3P25940 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
COL5A3P25940 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
COL5A3P25940 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC17.38■□□□□ 0.37
COL5A3P25940 SDCBP2P1-201ENST00000416115 614 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 AP000533.1-201ENST00000456143 1177 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC17.38■□□□□ 0.37
COL5A3P25940 MBP-230ENST00000528160 584 ntTSL 5 BASIC17.38■□□□□ 0.37
COL5A3P25940 PHBP18-201ENST00000546648 813 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 AC009065.4-201ENST00000563734 543 ntTSL 3 BASIC17.38■□□□□ 0.37
COL5A3P25940 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC17.38■□□□□ 0.37
COL5A3P25940 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 CSAG3-201ENST00000599845 844 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 Metazoa_SRP.156-201ENST00000622344 262 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 CSAG2-203ENST00000638741 844 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC17.38■□□□□ 0.37
COL5A3P25940 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC17.38■□□□□ 0.37
COL5A3P25940 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC17.38■□□□□ 0.37
COL5A3P25940 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
COL5A3P25940 AK2P2-201ENST00000439142 405 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 AC007679.1-201ENST00000458609 502 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 B9D1-206ENST00000461069 923 ntTSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 AC006986.1-201ENST00000612764 241 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC17.38■□□□□ 0.37
COL5A3P25940 AC137723.2-201ENST00000623540 398 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
COL5A3P25940 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
COL5A3P25940 AL513497.1-201ENST00000624273 2083 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 AC097359.2-201ENST00000604992 2389 ntBASIC17.38■□□□□ 0.37
COL5A3P25940 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
COL5A3P25940 SEC13-209ENST00000397117 1603 ntTSL 5 BASIC17.37■□□□□ 0.37
COL5A3P25940 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.37■□□□□ 0.37
COL5A3P25940 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC17.37■□□□□ 0.37
COL5A3P25940 PTGR1-205ENST00000407693 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
COL5A3P25940 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.37■□□□□ 0.37
COL5A3P25940 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms