Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ABCC6P1-202ENST00000565118 796 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 DNM1P50-201ENST00000565767 508 ntBASIC14.39□□□□□ -0.11
VCANP13611 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC14.39□□□□□ -0.11
VCANP13611 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC14.39□□□□□ -0.11
VCANP13611 FAM187B2P-201ENST00000577135 713 ntBASIC14.39□□□□□ -0.11
VCANP13611 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
VCANP13611 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
VCANP13611 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 AC112693.3-201ENST00000624819 1983 ntBASIC14.38□□□□□ -0.11
VCANP13611 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 PHBP3-201ENST00000412562 819 ntBASIC14.38□□□□□ -0.11
VCANP13611 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC14.38□□□□□ -0.11
VCANP13611 AL121972.2-201ENST00000431108 556 ntTSL 4 BASIC14.38□□□□□ -0.11
VCANP13611 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 AL365203.3-201ENST00000609742 2057 ntBASIC14.38□□□□□ -0.11
VCANP13611 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 AL356583.1-201ENST00000398739 1371 ntBASIC14.38□□□□□ -0.11
VCANP13611 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 TPM3-204ENST00000323144 1088 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VCANP13611 MB-204ENST00000401702 1043 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
VCANP13611 AC090589.3-201ENST00000524412 574 ntTSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 KRTAP2-2-202ENST00000542910 390 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 AL352977.2-201ENST00000557101 547 ntTSL 4 BASIC14.38□□□□□ -0.11
VCANP13611 TRPM1-210ENST00000559179 1002 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 RN7SL455P-201ENST00000580629 282 ntBASIC14.38□□□□□ -0.11
VCANP13611 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC14.38□□□□□ -0.11
VCANP13611 OR5L1-201ENST00000625203 1110 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
VCANP13611 ADK-205ENST00000539909 1866 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 C18orf15-201ENST00000623680 2534 ntBASIC14.38□□□□□ -0.11
VCANP13611 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 TP63-206ENST00000392463 1386 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
VCANP13611 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
VCANP13611 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
VCANP13611 PPP4R1L-201ENST00000244070 1474 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 NMNAT3-212ENST00000511444 873 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 MT3-202ENST00000561640 514 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 AL353581.1-201ENST00000606916 1224 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 AC123912.6-201ENST00000612657 315 ntBASIC14.37□□□□□ -0.11
VCANP13611 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 FAHD2A-204ENST00000447036 1366 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 NDRG1-222ENST00000522476 1385 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC14.37□□□□□ -0.11
VCANP13611 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 FRG1-201ENST00000226798 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 HFE-205ENST00000352392 653 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 AC096677.3-201ENST00000413162 387 ntBASIC14.37□□□□□ -0.11
VCANP13611 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.37□□□□□ -0.11
VCANP13611 AP002336.2-201ENST00000528607 539 ntTSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 AC078923.1-201ENST00000552856 748 ntTSL 3 BASIC14.37□□□□□ -0.11
VCANP13611 AC245369.3-201ENST00000624687 411 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
VCANP13611 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
VCANP13611 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
VCANP13611 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms