Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.9□□□□□ -0.18
SLC28A1O00337 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SLC28A1O00337 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SLC28A1O00337 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SLC28A1O00337 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
SLC28A1O00337 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
SLC28A1O00337 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
SLC28A1O00337 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 PCDHA5-203ENST00000614258 4248 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SLC28A1O00337 LAP3P2-201ENST00000454686 1454 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 AL122018.1-201ENST00000446607 2310 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 TCAF1P1-201ENST00000414990 2232 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.89□□□□□ -0.19
SLC28A1O00337 KRT43P-201ENST00000434019 910 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC13.89□□□□□ -0.19
SLC28A1O00337 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.89□□□□□ -0.19
SLC28A1O00337 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 DUX4L46-201ENST00000566845 751 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.89□□□□□ -0.19
SLC28A1O00337 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.89□□□□□ -0.19
SLC28A1O00337 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 AC132192.2-201ENST00000596206 1147 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 AL358472.5-202ENST00000641448 1267 ntBASIC13.89□□□□□ -0.19
SLC28A1O00337 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
SLC28A1O00337 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
SLC28A1O00337 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
SLC28A1O00337 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 FAM213A-205ENST00000606162 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
SLC28A1O00337 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SLC28A1O00337 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SLC28A1O00337 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
SLC28A1O00337 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
SLC28A1O00337 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC28A1O00337 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC28A1O00337 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.88□□□□□ -0.19
SLC28A1O00337 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
SLC28A1O00337 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.88□□□□□ -0.19
SLC28A1O00337 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.88□□□□□ -0.19
SLC28A1O00337 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.88□□□□□ -0.19
SLC28A1O00337 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
SLC28A1O00337 RBM8B-201ENST00000555532 525 ntBASIC13.88□□□□□ -0.19
SLC28A1O00337 AC132938.2-201ENST00000579188 680 ntBASIC13.88□□□□□ -0.19
SLC28A1O00337 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC13.88□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms