Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 AC144522.1-201ENST00000625111 1658 ntBASIC14.02□□□□□ -0.16
CUEDC1Q9NWM3 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CUEDC1Q9NWM3 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CUEDC1Q9NWM3 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CUEDC1Q9NWM3 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
CUEDC1Q9NWM3 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 FNTAP2-201ENST00000430308 634 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 EIF4HP1-201ENST00000453115 687 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 TUBB8P8-201ENST00000458717 1058 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 AC006122.1-201ENST00000493323 440 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 MBP-227ENST00000526111 581 ntTSL 4 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 AC013391.2-201ENST00000559041 501 ntTSL 5 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 BNIP3P13-201ENST00000599968 566 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 AC005840.4-201ENST00000541242 2494 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 HSPA8P5-201ENST00000456928 2069 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 HSPA7-201ENST00000445535 1927 ntBASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.17
CUEDC1Q9NWM3 AP002986.1-201ENST00000602376 1763 ntTSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC004899.1-201ENST00000424687 1714 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 CICP16-201ENST00000502609 2813 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 DNAJC27-201ENST00000264711 4992 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AL161932.2-201ENST00000435436 679 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 VDAC1P1-201ENST00000439229 848 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 SCARNA21-201ENST00000517026 139 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC005586.2-201ENST00000563946 837 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC005324.6-201ENST00000587972 613 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC008805.1-201ENST00000590892 364 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 SPCS2P2-201ENST00000603270 608 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AL023803.2-201ENST00000620080 638 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC128714.1-201ENST00000637035 887 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 AC138627.1-207ENST00000641560 1006 ntBASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 WNK1-201ENST00000315939 10452 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CUEDC1Q9NWM3 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 236.5 ms