Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 RORA-AS1-202ENST00000558140 869 ntTSL 2 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 RN7SL605P-201ENST00000577229 281 ntBASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SHANK3Q9BYB0 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 MIR611-201ENST00000384869 67 ntBASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 CASP2-203ENST00000392925 616 ntTSL 3 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 RN7SL69P-201ENST00000468423 272 ntBASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 RPL29P2-201ENST00000488409 460 ntBASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 NAA38-204ENST00000575208 529 ntTSL 3 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 USE1-207ENST00000596136 637 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 GOLGA8EP-201ENST00000530246 1959 ntBASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SHANK3Q9BYB0 OS9-207ENST00000439210 1946 ntTSL 2 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 GH1-203ENST00000351388 685 ntTSL 2 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 RBP4-203ENST00000371469 814 ntTSL 5 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 C10orf91-203ENST00000490765 462 ntTSL 3 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC17.89■□□□□ 0.45
SHANK3Q9BYB0 AL390755.1-201ENST00000623716 2027 ntBASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 ZNF485-202ENST00000374435 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AC006328.1-201ENST00000437571 379 ntBASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 TCEAL4-206ENST00000468024 1135 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 NDUFB2P1-201ENST00000506966 295 ntBASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 GRAMD4P6-201ENST00000556999 244 ntBASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AC006986.1-201ENST00000612764 241 ntBASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 MMP19-202ENST00000409200 1431 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.88■□□□□ 0.45
SHANK3Q9BYB0 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 CD79B-203ENST00000392795 1254 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 BX088651.3-201ENST00000418155 352 ntBASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 RN7SL121P-201ENST00000584223 273 ntBASIC17.87■□□□□ 0.45
SHANK3Q9BYB0 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms