Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXN3O00409 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
FOXN3O00409 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 MTX1P1-201ENST00000440904 838 ntBASIC15.42■□□□□ 0.06
FOXN3O00409 RNMTL1P1-201ENST00000454103 560 ntBASIC15.42■□□□□ 0.06
FOXN3O00409 RPL13AP20-201ENST00000459725 609 ntBASIC15.42■□□□□ 0.06
FOXN3O00409 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 AGER-214ENST00000538695 487 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 PGAM1P5-201ENST00000548011 764 ntBASIC15.42■□□□□ 0.06
FOXN3O00409 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC15.42■□□□□ 0.06
FOXN3O00409 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXN3O00409 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.42■□□□□ 0.06
FOXN3O00409 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXN3O00409 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 AL096828.3-201ENST00000615354 462 ntBASIC15.42■□□□□ 0.06
FOXN3O00409 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 DDX5-235ENST00000630471 473 ntTSL 4 BASIC15.42■□□□□ 0.06
FOXN3O00409 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXN3O00409 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC15.42■□□□□ 0.06
FOXN3O00409 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.42■□□□□ 0.06
FOXN3O00409 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
FOXN3O00409 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 AL365181.3-201ENST00000605886 3222 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
FOXN3O00409 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
FOXN3O00409 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXN3O00409 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXN3O00409 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXN3O00409 VDAC1P1-201ENST00000439229 848 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 GOLGA2P4-201ENST00000441462 777 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 Z93015.1-201ENST00000451718 390 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 TUBB8P8-201ENST00000458717 1058 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXN3O00409 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXN3O00409 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.41■□□□□ 0.06
FOXN3O00409 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXN3O00409 RN7SL560P-201ENST00000577943 264 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.41■□□□□ 0.06
FOXN3O00409 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
FOXN3O00409 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
FOXN3O00409 PPP1R26P4-201ENST00000619065 3527 ntBASIC15.41■□□□□ 0.06
FOXN3O00409 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC15.41■□□□□ 0.06
FOXN3O00409 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
FOXN3O00409 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXN3O00409 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.41■□□□□ 0.06
FOXN3O00409 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
FOXN3O00409 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
FOXN3O00409 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
FOXN3O00409 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms