Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 SRC-202ENST00000373558 4304 ntTSL 5 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 AC078991.1-201ENST00000437297 610 ntBASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 AP002353.1-201ENST00000528257 1599 ntBASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 HHEX-202ENST00000472590 1605 ntTSL 2 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC16.67■□□□□ 0.26
CTDP1Q9Y5B0 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 AC126177.1-201ENST00000547829 2218 ntBASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CHCHD2P9-201ENST00000461726 456 ntBASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 AP002803.1-201ENST00000528836 498 ntBASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 AC103702.1-201ENST00000548801 2630 ntBASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 AC005632.3-201ENST00000605544 308 ntBASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CACNA1G-232ENST00000515411 6960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CTDP1Q9Y5B0 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CTDP1Q9Y5B0 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms