Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AC009093.10-201ENST00000641956 1442 ntBASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 GMIP-201ENST00000203556 3538 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 F2-205ENST00000530231 1849 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 POM121L8P-201ENST00000417732 1281 ntBASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 POM121L9P-203ENST00000441984 1285 ntBASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AC092552.1-201ENST00000547243 906 ntBASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 BX324167.2-201ENST00000623717 3316 ntBASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 PLD1-201ENST00000331659 2906 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 FKBP4P6-201ENST00000457486 1332 ntBASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.09□□□□□ -0.15
CCDC28BQ9BUN5 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC14.08□□□□□ -0.15
CCDC28BQ9BUN5 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 FTLP10-202ENST00000505798 471 ntBASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AC093004.1-201ENST00000508850 424 ntBASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AC055876.2-201ENST00000531834 546 ntBASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 RPL28-205ENST00000558131 444 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AL390754.1-201ENST00000619088 582 ntBASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 ASS1-203ENST00000372393 1548 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 TFIP11-201ENST00000405938 2896 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 AL359845.1-201ENST00000458202 1648 ntBASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
CCDC28BQ9BUN5 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 HARS-202ENST00000415192 1401 ntTSL 2 BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
CCDC28BQ9BUN5 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms