Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 ZBED1P1-201ENST00000502364 1930 ntBASIC13.94□□□□□ -0.18
COL28A1Q2UY09 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
COL28A1Q2UY09 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 FRMPD2B-201ENST00000431305 1347 ntBASIC13.93□□□□□ -0.18
COL28A1Q2UY09 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 SHC1P1-201ENST00000425230 1745 ntBASIC13.93□□□□□ -0.18
COL28A1Q2UY09 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC092638.2-201ENST00000441105 947 ntBASIC13.93□□□□□ -0.18
COL28A1Q2UY09 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 FAM86B3P-203ENST00000523992 854 ntBASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC134312.2-201ENST00000563521 608 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AC002472.4-201ENST00000641915 272 ntBASIC13.93□□□□□ -0.18
COL28A1Q2UY09 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 MBLAC2-202ENST00000514906 1936 ntBASIC13.93□□□□□ -0.18
COL28A1Q2UY09 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 GSN-215ENST00000545652 2428 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
COL28A1Q2UY09 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 FKBP4P6-201ENST00000457486 1332 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 GCSHP3-201ENST00000431120 391 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 NDUFS6P1-201ENST00000485187 316 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 MESTP3-201ENST00000503460 968 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 LINC00634-202ENST00000505157 222 ntBASIC13.92□□□□□ -0.18
COL28A1Q2UY09 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC13.92□□□□□ -0.18
COL28A1Q2UY09 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms