Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.99□□□□□ -0.17
FOXA1P55317 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
FOXA1P55317 AC005562.1-201ENST00000583030 3219 ntBASIC13.98□□□□□ -0.17
FOXA1P55317 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
FOXA1P55317 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 AL008718.2-201ENST00000609206 1313 ntBASIC13.98□□□□□ -0.17
FOXA1P55317 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 SGK3-208ENST00000521198 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.98□□□□□ -0.17
FOXA1P55317 AL512384.1-201ENST00000406683 331 ntBASIC13.98□□□□□ -0.17
FOXA1P55317 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.98□□□□□ -0.17
FOXA1P55317 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 AL645933.1-201ENST00000440087 609 ntBASIC13.98□□□□□ -0.17
FOXA1P55317 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 PFN2-215ENST00000497148 743 ntTSL 4 BASIC13.98□□□□□ -0.17
FOXA1P55317 AP005018.1-201ENST00000525475 301 ntBASIC13.98□□□□□ -0.17
FOXA1P55317 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 ZACNP1-201ENST00000612259 710 ntBASIC13.98□□□□□ -0.17
FOXA1P55317 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC13.98□□□□□ -0.17
FOXA1P55317 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC13.98□□□□□ -0.17
FOXA1P55317 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
FOXA1P55317 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.97□□□□□ -0.17
FOXA1P55317 AC135782.3-201ENST00000562782 2105 ntBASIC13.97□□□□□ -0.17
FOXA1P55317 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
FOXA1P55317 NUTM2HP-201ENST00000442076 2498 ntBASIC13.97□□□□□ -0.17
FOXA1P55317 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 REXO1L6P-201ENST00000603433 1515 ntBASIC13.97□□□□□ -0.17
FOXA1P55317 MARS-201ENST00000262027 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
FOXA1P55317 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.97□□□□□ -0.17
FOXA1P55317 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 HIST2H2BB-201ENST00000449108 381 ntBASIC13.97□□□□□ -0.17
FOXA1P55317 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.97□□□□□ -0.17
FOXA1P55317 AC132192.2-201ENST00000596206 1147 ntBASIC13.97□□□□□ -0.17
FOXA1P55317 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC13.97□□□□□ -0.17
FOXA1P55317 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
FOXA1P55317 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC13.97□□□□□ -0.17
FOXA1P55317 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms