Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 Z82170.1-201ENST00000625081 3192 ntBASIC12.79□□□□□ -0.36
SOX2P48431 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
SOX2P48431 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 AC093004.1-201ENST00000508850 424 ntBASIC12.79□□□□□ -0.36
SOX2P48431 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
SOX2P48431 AC092552.1-201ENST00000547243 906 ntBASIC12.79□□□□□ -0.36
SOX2P48431 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC12.79□□□□□ -0.36
SOX2P48431 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC12.79□□□□□ -0.36
SOX2P48431 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC12.79□□□□□ -0.36
SOX2P48431 AC133539.2-201ENST00000604757 467 ntBASIC12.79□□□□□ -0.36
SOX2P48431 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 AC093726.1-201ENST00000608064 963 ntBASIC12.79□□□□□ -0.36
SOX2P48431 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 METTL26-214ENST00000614890 801 ntTSL 3 BASIC12.79□□□□□ -0.36
SOX2P48431 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC12.79□□□□□ -0.36
SOX2P48431 AP001002.3-201ENST00000623482 206 ntBASIC12.79□□□□□ -0.36
SOX2P48431 ZDHHC15-201ENST00000373367 5796 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC12.79□□□□□ -0.36
SOX2P48431 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 SPATS2-223ENST00000553127 3320 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 SLC7A15P-201ENST00000424028 1363 ntBASIC12.79□□□□□ -0.36
SOX2P48431 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 SON-203ENST00000381679 7860 ntTSL 5 BASIC12.79□□□□□ -0.36
SOX2P48431 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
SOX2P48431 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
SOX2P48431 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
SOX2P48431 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 AC005014.1-201ENST00000432006 2976 ntBASIC12.78□□□□□ -0.36
SOX2P48431 NEK9-201ENST00000238616 8310 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
SOX2P48431 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 AC068760.1-201ENST00000493579 1953 ntBASIC12.78□□□□□ -0.36
SOX2P48431 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 AL805961.2-201ENST00000642139 4817 ntBASIC12.78□□□□□ -0.36
SOX2P48431 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC12.78□□□□□ -0.36
SOX2P48431 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.78□□□□□ -0.36
SOX2P48431 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.78□□□□□ -0.36
SOX2P48431 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.78□□□□□ -0.36
SOX2P48431 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 AC123567.1-201ENST00000548294 1261 ntBASIC12.78□□□□□ -0.36
SOX2P48431 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC12.78□□□□□ -0.36
SOX2P48431 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC12.78□□□□□ -0.36
SOX2P48431 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC12.78□□□□□ -0.36
SOX2P48431 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
SOX2P48431 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
SOX2P48431 F10-203ENST00000409306 1450 ntTSL 3 BASIC12.78□□□□□ -0.36
SOX2P48431 A1CF-202ENST00000373993 1997 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.78□□□□□ -0.36
SOX2P48431 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
SOX2P48431 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
SOX2P48431 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC12.77□□□□□ -0.36
SOX2P48431 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
SOX2P48431 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.77□□□□□ -0.36
SOX2P48431 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
SOX2P48431 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
SOX2P48431 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SOX2P48431 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
SOX2P48431 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms