Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 AC130686.1-201ENST00000622936 2466 ntBASIC13.67□□□□□ -0.22
SOX3P41225 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC13.67□□□□□ -0.22
SOX3P41225 POM121L10P-201ENST00000436994 1285 ntBASIC13.67□□□□□ -0.22
SOX3P41225 GCOM2-201ENST00000509133 1104 ntBASIC13.67□□□□□ -0.22
SOX3P41225 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC13.67□□□□□ -0.22
SOX3P41225 AC131206.1-201ENST00000538078 1211 ntBASIC13.67□□□□□ -0.22
SOX3P41225 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
SOX3P41225 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.67□□□□□ -0.22
SOX3P41225 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 AC018735.1-201ENST00000437208 1502 ntBASIC13.67□□□□□ -0.22
SOX3P41225 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SOX3P41225 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 AC020907.1-201ENST00000616460 1350 ntBASIC13.67□□□□□ -0.22
SOX3P41225 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SOX3P41225 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.67□□□□□ -0.22
SOX3P41225 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SOX3P41225 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 AC027612.1-201ENST00000445234 2395 ntBASIC13.66□□□□□ -0.22
SOX3P41225 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.66□□□□□ -0.22
SOX3P41225 PTPA-218ENST00000435132 618 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.66□□□□□ -0.22
SOX3P41225 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.66□□□□□ -0.22
SOX3P41225 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.66□□□□□ -0.22
SOX3P41225 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.66□□□□□ -0.22
SOX3P41225 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 AC007663.3-201ENST00000609632 465 ntBASIC13.66□□□□□ -0.22
SOX3P41225 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.66□□□□□ -0.22
SOX3P41225 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.66□□□□□ -0.22
SOX3P41225 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SOX3P41225 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
SOX3P41225 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
SOX3P41225 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 E2F3P2-201ENST00000447755 1422 ntBASIC13.65□□□□□ -0.22
SOX3P41225 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms