Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 AL591499.1-201ENST00000307155 1153 ntBASIC19.61■□□□□ 0.73
NPHP4O75161 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 RBM14-205ENST00000443702 732 ntTSL 3 BASIC19.61■□□□□ 0.73
NPHP4O75161 AL161727.1-201ENST00000457409 530 ntBASIC19.61■□□□□ 0.73
NPHP4O75161 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 DERL2-206ENST00000572834 589 ntTSL 3 BASIC19.61■□□□□ 0.73
NPHP4O75161 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 MIR4326-201ENST00000582203 59 ntBASIC19.61■□□□□ 0.73
NPHP4O75161 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC19.61■□□□□ 0.73
NPHP4O75161 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
NPHP4O75161 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.61■□□□□ 0.73
NPHP4O75161 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC19.61■□□□□ 0.73
NPHP4O75161 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
NPHP4O75161 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
NPHP4O75161 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NPHP4O75161 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
NPHP4O75161 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
NPHP4O75161 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
NPHP4O75161 AC090696.1-201ENST00000419100 418 ntTSL 3 BASIC19.6■□□□□ 0.73
NPHP4O75161 SRP9P1-201ENST00000445874 261 ntBASIC19.6■□□□□ 0.73
NPHP4O75161 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC19.6■□□□□ 0.73
NPHP4O75161 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC19.6■□□□□ 0.73
NPHP4O75161 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC19.6■□□□□ 0.73
NPHP4O75161 RN7SL202P-201ENST00000584410 262 ntBASIC19.6■□□□□ 0.73
NPHP4O75161 TUBB4A-207ENST00000596926 548 ntTSL 4 BASIC19.6■□□□□ 0.73
NPHP4O75161 URGCP-MRPS24-201ENST00000603700 795 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
NPHP4O75161 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 POLL-206ENST00000370172 2308 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP4O75161 SAP18-201ENST00000382533 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 AL162727.3-201ENST00000635661 2787 ntBASIC19.6■□□□□ 0.73
NPHP4O75161 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 PROZ-201ENST00000342783 1551 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC19.6■□□□□ 0.73
NPHP4O75161 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
NPHP4O75161 WNT8A-202ENST00000398754 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 AC097474.1-201ENST00000506481 1371 ntBASIC19.6■□□□□ 0.73
NPHP4O75161 AC106785.2-201ENST00000564385 1319 ntBASIC19.6■□□□□ 0.73
NPHP4O75161 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
NPHP4O75161 DPH2-202ENST00000396758 1738 ntTSL 3 BASIC19.6■□□□□ 0.73
NPHP4O75161 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP4O75161 TEX33-203ENST00000405091 1149 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
NPHP4O75161 AC113398.1-201ENST00000464124 406 ntBASIC19.59■□□□□ 0.73
NPHP4O75161 NDUFB2P1-201ENST00000506966 295 ntBASIC19.59■□□□□ 0.73
NPHP4O75161 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC19.59■□□□□ 0.73
NPHP4O75161 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC19.59■□□□□ 0.73
NPHP4O75161 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
NPHP4O75161 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP4O75161 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.59■□□□□ 0.73
NPHP4O75161 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.59■□□□□ 0.73
NPHP4O75161 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
NPHP4O75161 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP4O75161 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
NPHP4O75161 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC19.59■□□□□ 0.73
NPHP4O75161 U3.41-201ENST00000408711 219 ntBASIC19.59■□□□□ 0.73
NPHP4O75161 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC19.59■□□□□ 0.73
NPHP4O75161 RNF7-205ENST00000480908 782 ntTSL 4 BASIC19.59■□□□□ 0.73
NPHP4O75161 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NPHP4O75161 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms