Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC239800.4-201ENST00000603712 296 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC087752.4-201ENST00000605911 462 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AC008687.7-202ENST00000637404 953 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 PDIA3P1-201ENST00000471856 1510 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 DKFZP434A062-201ENST00000573103 5021 ntBASIC14.54□□□□□ -0.08
VPS9D1Q9Y2B5 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 AL161932.2-201ENST00000435436 679 ntBASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 IGHVIII-5-2-201ENST00000522505 261 ntBASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
VPS9D1Q9Y2B5 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 ACAN-209ENST00000617301 8669 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 AC012617.1-204ENST00000586340 2305 ntBASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 TUBB8P4-201ENST00000511806 1324 ntBASIC14.52□□□□□ -0.08
VPS9D1Q9Y2B5 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 MIR326-201ENST00000362220 95 ntBASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 FAM58BP-201ENST00000439056 645 ntBASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 MTCYBP11-201ENST00000447254 1109 ntBASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 PPP1R26-AS1-201ENST00000455039 643 ntTSL 4 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 AC025244.1-201ENST00000505930 469 ntTSL 3 BASIC14.52□□□□□ -0.09
VPS9D1Q9Y2B5 AC021546.1-201ENST00000518927 1031 ntTSL 3 BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms