Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 MKL1-204ENST00000402630 747 ntTSL 2 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 YBX1P3-201ENST00000468366 909 ntBASIC22.9■■□□□ 1.26
IFT140Q96RY7 AC114812.4-201ENST00000506676 757 ntBASIC22.9■■□□□ 1.26
IFT140Q96RY7 EFNA5-204ENST00000509503 637 ntTSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 HNRNPA1P72-201ENST00000529511 967 ntBASIC22.9■■□□□ 1.26
IFT140Q96RY7 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 CES3-203ENST00000543856 3178 ntTSL 2 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
IFT140Q96RY7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC22.9■■□□□ 1.26
IFT140Q96RY7 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
IFT140Q96RY7 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
IFT140Q96RY7 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC22.89■■□□□ 1.26
IFT140Q96RY7 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC22.89■■□□□ 1.26
IFT140Q96RY7 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
IFT140Q96RY7 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
IFT140Q96RY7 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.26
IFT140Q96RY7 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC22.89■■□□□ 1.26
IFT140Q96RY7 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
IFT140Q96RY7 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 AC105443.1-201ENST00000433754 712 ntBASIC22.89■■□□□ 1.25
IFT140Q96RY7 CLNK-203ENST00000507719 1143 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 TP73-207ENST00000378290 1831 ntTSL 2 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 TCAF2P1-201ENST00000291129 2421 ntBASIC22.89■■□□□ 1.25
IFT140Q96RY7 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
IFT140Q96RY7 HPD-204ENST00000543163 1709 ntTSL 5 BASIC22.89■■□□□ 1.25
IFT140Q96RY7 NME1-209ENST00000511355 1645 ntTSL 5 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 TUBB4AP1-201ENST00000450755 1325 ntBASIC22.88■■□□□ 1.25
IFT140Q96RY7 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 MUC1-207ENST00000368392 1032 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 MUC1-208ENST00000368393 937 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 SUMO1-202ENST00000392245 1071 ntAPPRIS P1 TSL 3 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 TUBB8P9-201ENST00000422534 1276 ntBASIC22.88■■□□□ 1.25
IFT140Q96RY7 TUBB8P10-201ENST00000430210 1279 ntBASIC22.88■■□□□ 1.25
IFT140Q96RY7 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 CDHR4-205ENST00000487256 1017 ntTSL 5 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 RN7SL646P-201ENST00000492969 297 ntBASIC22.88■■□□□ 1.25
IFT140Q96RY7 MIR6165-201ENST00000614803 84 ntBASIC22.88■■□□□ 1.25
IFT140Q96RY7 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
IFT140Q96RY7 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC22.88■■□□□ 1.25
IFT140Q96RY7 NRADDP-202ENST00000641269 1585 ntBASIC22.88■■□□□ 1.25
IFT140Q96RY7 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
IFT140Q96RY7 PARN-202ENST00000420015 2360 ntTSL 2 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
IFT140Q96RY7 PMF1-201ENST00000368273 884 ntTSL 2 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 LCK-206ENST00000373564 2137 ntTSL 5 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 AC074019.1-201ENST00000428788 1096 ntBASIC22.87■■□□□ 1.25
IFT140Q96RY7 HNRNPA1P73-201ENST00000446472 928 ntBASIC22.87■■□□□ 1.25
IFT140Q96RY7 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 AC007279.1-201ENST00000448547 837 ntBASIC22.87■■□□□ 1.25
IFT140Q96RY7 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC22.87■■□□□ 1.25
IFT140Q96RY7 RN7SL162P-201ENST00000579233 292 ntBASIC22.87■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms